Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F14
         (804 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000516926 Cluster: PREDICTED: similar to RPP20 prot...    74   5e-12
UniRef50_UPI0000E48599 Cluster: PREDICTED: hypothetical protein,...    67   4e-10
UniRef50_UPI0000D56C13 Cluster: PREDICTED: similar to RPP20 prot...    63   9e-09
UniRef50_O75817 Cluster: Ribonuclease P protein subunit p20; n=1...    62   2e-08
UniRef50_Q9U1X8 Cluster: Putative uncharacterized protein; n=2; ...    55   2e-06
UniRef50_Q5TTP9 Cluster: ENSANGP00000027577; n=2; Culicidae|Rep:...    53   1e-05
UniRef50_UPI00015B4796 Cluster: PREDICTED: similar to Processing...    45   0.003
UniRef50_Q2V622 Cluster: RNase P protein subunit DRpp20; n=2; Di...    43   0.010

>UniRef50_UPI0000516926 Cluster: PREDICTED: similar to RPP20
           protein; n=1; Apis mellifera|Rep: PREDICTED: similar to
           RPP20 protein - Apis mellifera
          Length = 155

 Score = 73.7 bits (173), Expect = 5e-12
 Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
 Frame = +3

Query: 96  NKNYALKKRLP-PRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQRC 272
           + +Y +KKR P       D  +FIT KTNFKAQL KC   L  G  EII+HGLG+ IQ+ 
Sbjct: 30  SSDYIIKKRQPFDAKRKRDKDIFITNKTNFKAQLKKCEKFLNNGNFEIIIHGLGSTIQKA 89

Query: 273 CNLALQLEILFSGT 314
           C+LALQL+ +  G+
Sbjct: 90  CSLALQLQEIHYGS 103


>UniRef50_UPI0000E48599 Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: hypothetical protein, partial -
           Strongylocentrotus purpuratus
          Length = 101

 Score = 67.3 bits (157), Expect = 4e-10
 Identities = 31/68 (45%), Positives = 45/68 (66%)
 Frame = +3

Query: 111 LKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQRCCNLALQ 290
           ++KR P R     N +++T+K+NF +Q+++C  L   GEKE+ +H LGAAI R  N+ALQ
Sbjct: 32  IRKRQPRRLPKRKNDIYVTRKSNFASQMEQCEKLFDGGEKEVCIHSLGAAINRALNIALQ 91

Query: 291 LEILFSGT 314
           LE    GT
Sbjct: 92  LESRSLGT 99


>UniRef50_UPI0000D56C13 Cluster: PREDICTED: similar to RPP20
           protein; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to RPP20 protein - Tribolium castaneum
          Length = 131

 Score = 62.9 bits (146), Expect = 9e-09
 Identities = 30/67 (44%), Positives = 45/67 (67%)
 Frame = +3

Query: 93  PNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQRC 272
           P+ ++ L+KR   +P  G  V+++  KT  KA LD+C  L++ GEKEI ++ LGAAIQR 
Sbjct: 14  PHSDHILRKRQSQKPQFGKTVIYVNTKTPVKALLDRCSKLISEGEKEITIYCLGAAIQRG 73

Query: 273 CNLALQL 293
             LAL++
Sbjct: 74  TLLALKV 80



 Score = 34.7 bits (76), Expect = 2.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 319 QIEVNTGSVDLVDDLEPLTDELDFXL 396
           QI  NT + +L+DDLEP TD+ D+ +
Sbjct: 88  QIHTNTFTTELIDDLEPATDDADYAI 113


>UniRef50_O75817 Cluster: Ribonuclease P protein subunit p20; n=19;
           Eumetazoa|Rep: Ribonuclease P protein subunit p20 - Homo
           sapiens (Human)
          Length = 140

 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
 Frame = +3

Query: 105 YALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLL---TRGE---KEIILHGLGAAIQ 266
           Y L+KRLP R     N +++  KT+FKAQL +C  LL    RG+    EI +HGLG AI 
Sbjct: 20  YTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGARGQNACSEIYIHGLGLAIN 79

Query: 267 RCCNLALQLE 296
           R  N+ALQL+
Sbjct: 80  RAINIALQLQ 89


>UniRef50_Q9U1X8 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 130

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 45/76 (59%)
 Frame = +3

Query: 87  RYPNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQ 266
           R+  K   +++R P +P +  N ++IT+KTN ++Q     ++L     E+ +HG+GA+I 
Sbjct: 11  RFDEKTNEMRRRPPVKPSSNPNHIYITRKTNVESQSKSTEEMLNNAFDEVFIHGMGASIN 70

Query: 267 RCCNLALQLEILFSGT 314
           +    A+++E  F G+
Sbjct: 71  KALVFAMEVERRFGGS 86


>UniRef50_Q5TTP9 Cluster: ENSANGP00000027577; n=2; Culicidae|Rep:
           ENSANGP00000027577 - Anopheles gambiae str. PEST
          Length = 181

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 26/73 (35%), Positives = 41/73 (56%)
 Frame = +3

Query: 87  RYPNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQ 266
           R P   + +K R+ P+    +N +++T K++F  QL  C D+L     E+ LH  G AI 
Sbjct: 50  RKPTDRHTVKNRVLPKYFTRENDVYVTYKSDFTYQLKSCLDILNSPLGEVFLHCTGRAIN 109

Query: 267 RCCNLALQLEILF 305
           R  NLAL+++  F
Sbjct: 110 RGINLALRVKAEF 122


>UniRef50_UPI00015B4796 Cluster: PREDICTED: similar to Processing of
           precursor 7, ribonuclease P family; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to Processing of
           precursor 7, ribonuclease P family - Nasonia vitripennis
          Length = 155

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +3

Query: 96  NKNYALKKRLPPR-PVNGDNVLFITKKTNFKAQLDKCCDLL-TRGEKEIILHGLGAAIQR 269
           + N+ +KKR   + P  G +V ++ +K++ KA +  C  LL T   KEII+HG GA   +
Sbjct: 30  SNNHVVKKRAGCKFPKTGKDV-YVRRKSSIKAIITYCKKLLDTTDSKEIIIHGQGARSNK 88

Query: 270 CCNLALQLEILFSGTW 317
             N+   L   +SGT+
Sbjct: 89  AINVGRHLVSKYSGTY 104


>UniRef50_Q2V622 Cluster: RNase P protein subunit DRpp20; n=2;
           Dictyostelium discoideum|Rep: RNase P protein subunit
           DRpp20 - Dictyostelium discoideum (Slime mold)
          Length = 228

 Score = 42.7 bits (96), Expect = 0.010
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +3

Query: 93  PNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLL-TRGEKEIILHGLGAAIQR 269
           P K Y   +R+  RP    N ++++    F   + +  +LL  + EKEII+HGLGAAI  
Sbjct: 40  PTK-YVYMRRVVQRPYAKKNEIYLSNNGKFLYYVKRAKNLLFNQREKEIIIHGLGAAISL 98

Query: 270 CCNLALQLE 296
              L+L L+
Sbjct: 99  AVELSLYLQ 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,893,589
Number of Sequences: 1657284
Number of extensions: 9157538
Number of successful extensions: 15972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15176
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)