Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F14
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001430-1|AAH01430.1|  140|Homo sapiens processing of precursor...    62   3e-09
U94316-1|AAC24113.1|  140|Homo sapiens ribonuclease P protein su...    60   1e-08

>BC001430-1|AAH01430.1|  140|Homo sapiens processing of precursor 7,
           ribonuclease P subunit (S. cerevisiae) protein.
          Length = 140

 Score = 61.7 bits (143), Expect = 3e-09
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
 Frame = +3

Query: 105 YALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLL---TRGE---KEIILHGLGAAIQ 266
           Y L+KRLP R     N +++  KT+FKAQL +C  LL    RG+    EI +HGLG AI 
Sbjct: 20  YTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGARGQNACSEIYIHGLGLAIN 79

Query: 267 RCCNLALQLE 296
           R  N+ALQL+
Sbjct: 80  RAINIALQLQ 89



 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 319 QIEVNTGSVDLVDDLEPLTD 378
           Q+  NT +V+LVD+LEP TD
Sbjct: 97  QVAANTSTVELVDELEPETD 116


>U94316-1|AAC24113.1|  140|Homo sapiens ribonuclease P protein
           subunit p20 protein.
          Length = 140

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
 Frame = +3

Query: 105 YALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLL---TRGE---KEIILHGLGAAIQ 266
           Y L+KRLP R     N +++  KT+FKAQL +C  LL    RG+    EI +HGLG AI 
Sbjct: 20  YTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGARGQNACSEIYIHGLGLAIN 79

Query: 267 RCCNLALQLE 296
              N+ALQL+
Sbjct: 80  HAINIALQLQ 89



 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 319 QIEVNTGSVDLVDDLEPLTD 378
           Q+  NT +V+LVD+LEP TD
Sbjct: 97  QVAANTSTVELVDELEPETD 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,161,625
Number of Sequences: 237096
Number of extensions: 1657496
Number of successful extensions: 2334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2057
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)