Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F14
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical...    55   5e-08

>AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical
           protein Y62E10A.2 protein.
          Length = 130

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/76 (30%), Positives = 45/76 (59%)
 Frame = +3

Query: 87  RYPNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQ 266
           R+  K   +++R P +P +  N ++IT+KTN ++Q     ++L     E+ +HG+GA+I 
Sbjct: 11  RFDEKTNEMRRRPPVKPSSNPNHIYITRKTNVESQSKSTEEMLNNAFDEVFIHGMGASIN 70

Query: 267 RCCNLALQLEILFSGT 314
           +    A+++E  F G+
Sbjct: 71  KALVFAMEVERRFGGS 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,662,696
Number of Sequences: 27780
Number of extensions: 235403
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)