Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F12
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.83 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 678 EXXXPPPPPPP 646
           E   PPPPPPP
Sbjct: 727 ENNAPPPPPPP 737


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 647 GGGGGGGXXXSPPP 688
           GGGGG G   + PP
Sbjct: 524 GGGGGSGSGNNQPP 537



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 648 GGGXGGGXXSPPPPP 692
           GGG G G   PP  P
Sbjct: 526 GGGSGSGNNQPPGGP 540


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,994
Number of Sequences: 336
Number of extensions: 926
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)