Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_F12
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 32 0.48
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 32 0.48
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.84
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 31 0.84
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 2.6
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 3.4
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 3.4
Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 24 4.9
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 28 5.9
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 28 5.9
AC006636-3|AAF39799.1| 139|Caenorhabditis elegans Ground-like (... 28 5.9
AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 28 7.8
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 28 7.8
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GGG +PPPPP
Sbjct: 31 GGGGGGGDAAPPPPP 45
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 691 GGGGGXXXPPPXPP 650
GGGGG PPP PP
Sbjct: 33 GGGGGDAAPPPPPP 46
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 690 GGGGEXXXPPPPPP 649
GGGG PPPPPP
Sbjct: 33 GGGGGDAAPPPPPP 46
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 690 GGGGEXXXPPPPPPP 646
GGGG PPPPPP
Sbjct: 32 GGGGGGDAAPPPPPP 46
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GG PPPPP
Sbjct: 32 GGGGGGDAAPPPPPP 46
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GGG +PPPPP
Sbjct: 35 GGGGGGGCCAPPPPP 49
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 647 GGGGGGGXXXSPPPP 691
GGGGGGG +PPPP
Sbjct: 34 GGGGGGGGCCAPPPP 48
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 691 GGGGGXXXPPPXPP 650
GGGGG PPP PP
Sbjct: 37 GGGGGCCAPPPPPP 50
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 690 GGGGEXXXPPPPPP 649
GGGG PPPPPP
Sbjct: 37 GGGGGCCAPPPPPP 50
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 690 GGGGEXXXPPPPPPP 646
GGGG PPPPPP
Sbjct: 36 GGGGGGCCAPPPPPP 50
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 708 FXXXXXGGGGEXXXPPPPPPP 646
F GGGG PPPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 709 FXXXXXGGGGGXXXPPPXPPP 647
F GGGG PPP PPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 708 FXXXXXGGGGEXXXPPPPPPP 646
F GGGG PPPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 709 FXXXXXGGGGGXXXPPPXPPP 647
F GGGG PPP PPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GGG PPPPP
Sbjct: 45 GGGCGGGCAPPPPPP 59
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GGG PPPPP
Sbjct: 102 GGGCGGGCAPPPPPP 116
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GG +PPPPP
Sbjct: 44 GGGGCGGGCAPPPPP 58
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GG +PPPPP
Sbjct: 101 GGGGCGGGCAPPPPP 115
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 647 GGGGGGGXXXSPPPP 691
GGGGG G +PPPP
Sbjct: 43 GGGGGCGGGCAPPPP 57
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 647 GGGGGGGXXXSPPPP 691
GGGGG G +PPPP
Sbjct: 100 GGGGGCGGGCAPPPP 114
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 708 FXXXXXGGGGEXXXPPPPPPP 646
F GGGG PPPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 709 FXXXXXGGGGGXXXPPPXPPP 647
F GGGG PPP PPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 651 GGXGGGXXSPPPPP 692
GG GGG +PPPPP
Sbjct: 22 GGGGGGCCAPPPPP 35
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 712 FFXXXXXGGGGGXXXPPPXPP 650
F GGGGG PPP PP
Sbjct: 16 FLFNLLGGGGGGCCAPPPPPP 36
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 711 FFXXXXXGGGGEXXXPPPPPP 649
F GGGG PPPPPP
Sbjct: 16 FLFNLLGGGGGGCCAPPPPPP 36
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 708 FXXXXXGGGGEXXXPPPPPPP 646
F GGGG PPPPPP
Sbjct: 16 FLFNLLGGGGGGCCAPPPPPP 36
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPPXXXXKKK 713
GGG GGG PP PP K +
Sbjct: 632 GGGGGGGPTGPPAPPKPPAKPR 653
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPPXXXXKKK 713
GGG GGG PP PP K +
Sbjct: 632 GGGGGGGPTGPPAPPKPPAKPR 653
>Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical
protein F46F2.3 protein.
Length = 137
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 690 GGGGEXXXPPPPPPP 646
GGGG PPPPPP
Sbjct: 108 GGGGAYAQAPPPPPP 122
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 666 PPPPPPP 646
PPPPPPP
Sbjct: 138 PPPPPPP 144
Score = 23.0 bits (47), Expect(2) = 4.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -1
Query: 687 GGGEXXXPPPPPP 649
G E PPPPPP
Sbjct: 116 GDHEASPPPPPPP 128
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 708 FXXXXXGGGGEXXXPPPPPP 649
F GGGG PPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPP 36
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 690 GGGGEXXXPPPPPPP 646
GGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPP 36
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 708 FXXXXXGGGGEXXXPPPPPP 649
F GGGG PPPPPP
Sbjct: 17 FLFPSGGGGGCGCAPPPPPP 36
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 690 GGGGEXXXPPPPPPP 646
GGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPP 36
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG G G +PPPPP
Sbjct: 24 GGGGGCGCGAPPPPP 38
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 647 GGGGGGGXXXSPPPP 691
GGGGGG +PPPP
Sbjct: 23 GGGGGGCGCGAPPPP 37
>AC006636-3|AAF39799.1| 139|Caenorhabditis elegans Ground-like (grd
related) protein27 protein.
Length = 139
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG G G +PPPPP
Sbjct: 25 GGGGGCGCGAPPPPP 39
>AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like
(grd related) protein31 protein.
Length = 156
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 648 GGGXGGGXXSPPPPP 692
GGG GGG PPPP
Sbjct: 37 GGGCGGGCGCAPPPP 51
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 691 GGGGGXXXPPPXPPP 647
GGG G PPP PPP
Sbjct: 58 GGGYGCGIPPPPPPP 72
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 690 GGGGEXXXPPPPPPP 646
GGG PPPPPPP
Sbjct: 58 GGGYGCGIPPPPPPP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,291,305
Number of Sequences: 27780
Number of extensions: 123081
Number of successful extensions: 3688
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2146
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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