Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F11
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.55 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.55 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.97 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +2

Query: 260 DTVELVLKC-------LFLGMWQILKILVKNLWKGHRRKLSKNFPPVEMSVDASVGTHCH 418
           D  +++LKC       LF  ++  L IL+  ++    RK+ +NF   +  +  ++ T C 
Sbjct: 659 DRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKF-IGFTMYTTCI 717

Query: 419 IKIMGVKYHYVETGPKSGQMILILCDA 499
           I +  V   Y  TG      I  LC A
Sbjct: 718 IWLAFVPI-YFGTGNAHETQITTLCVA 743


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +2

Query: 260  DTVELVLKC-------LFLGMWQILKILVKNLWKGHRRKLSKNFPPVEMSVDASVGTHCH 418
            D  +++LKC       LF  ++  L IL+  ++    RK+ +NF   +  +  ++ T C 
Sbjct: 749  DRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKF-IGFTMYTTCI 807

Query: 419  IKIMGVKYHYVETGPKSGQMILILCDA 499
            I +  V   Y  TG      I  LC A
Sbjct: 808  IWLAFVPI-YFGTGNAHETQITTLCVA 833


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -1

Query: 318 IFKIC---HIPRNKHFSTNSTVSQPLTTCKTSFFALIFHEVYFIYMNLHNNHVEPYNKLK 148
           IF IC       ++   T     QP+   +T     I  EVY   +N+ + +V+ Y +  
Sbjct: 7   IFAICVCVGAMTHEELKTGIQTLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVECM 66

Query: 147 GLRYNVM--YGSYN 112
             ++NV+   G++N
Sbjct: 67  MKKFNVVDENGNFN 80


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 204 YFIYMNLHNNHVEPYNKLKGLRYNVMYGSY 115
           Y  Y N +NN+   YN      Y  +Y +Y
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 204 YFIYMNLHNNHVEPYNKLKGLRYNVMYGSY 115
           Y  Y N +NN+   YN      Y  +Y +Y
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 771 TIGP*QCAKYQVSIPPIPKPITMAGFFGDAPKASIRLDSSST 646
           T+G      ++  +P +P P      FG A  A +  D S T
Sbjct: 462 TVGTTVAPCFEEPLPSLPLPGADDDLFGPASPAYVHEDVSPT 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,901
Number of Sequences: 438
Number of extensions: 5972
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)