Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F09
         (1035 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.21 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.28 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 0.21
 Identities = 30/117 (25%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
 Frame = +1

Query: 394 PGXNPPXXXXXXPXXXPPRPAXXX-------PGXXRXSXXXXXRPPXPSXTXGAXQPPPX 552
           PG N P      P   PP P           PG  R       RPP P     A      
Sbjct: 42  PGNNRPIYI---PQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEP 98

Query: 553 XXXRGXXXRAPXPP---LXGTXSAXPQXXPPXNXPPPPPKXXXXPAPPXXXPRXHXP 714
              R      P PP   L     A P    P   P P P        P   P  + P
Sbjct: 99  GNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 578 GPPXPPXXVPXPPXPKXPPXXTTPPPPPXPXXXQP 682
           GP   P   P  P    PP  +  PPP  P    P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +2

Query: 575 GGPPXPPXXVPXPPXPKXPPXXTTPPPPPXPXXXQPXP 688
           GG   P    P PP P        PP P  P      P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 12/45 (26%), Positives = 14/45 (31%)
 Frame = +1

Query: 514 PSXTXGAXQPPPXXXXRGXXXRAPXPPLXGTXSAXPQXXPPXNXP 648
           PS      QP P    +     +P  P  G     P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 APXP-PLXGTXSAXPQXXPPXNXPPPPPKXXXXPAPPXXXP 699
           AP P P        PQ   P N    PP      APP   P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 621 PKXPPXXXPPPPPQXXXGASPXPXXXPXPRSPP 719
           P+  P   P  P +   G+ P P   P P  PP
Sbjct: 23  PQPSPHQSPQAPQR---GSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 630 PPXXXPPPPPQXXXG 674
           PP   PPPPP    G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 631 PPXNXPPPPPKXXXXP 678
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,896
Number of Sequences: 438
Number of extensions: 5922
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34588554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)