Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F05
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    72   2e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   3e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    44   0.005
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    42   0.016
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    41   0.037
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.086
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.46 
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   5.7  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.7  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 72.1 bits (169), Expect = 2e-11
 Identities = 48/93 (51%), Positives = 52/93 (55%)
 Frame = +1

Query: 322 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 501
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76

Query: 502 GTVKRPRCWRFSIGSAPLTSITKIDAQSDSXST 600
               RPR  RFSIGSAPLTSI K DAQ     T
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGET 106


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 3e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -1

Query: 498 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 385
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 298 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 465
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 417 HSKAVIRLSTESGDNAGKNM 476
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 44.0 bits (99), Expect = 0.005
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +2

Query: 224 INKLTTTIAFILCFRFRVEVWEVFSALMNRPTRGERRFAYW 346
           +++LT      L  RF V    V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 22/31 (70%), Positives = 23/31 (74%)
 Frame = +1

Query: 490 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQ 582
           SK+  T    R  RFSIGSAPLTSITKIDAQ
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQ 32


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 41.1 bits (92), Expect = 0.037
 Identities = 21/31 (67%), Positives = 22/31 (70%)
 Frame = +1

Query: 508 VKRPRCWRFSIGSAPLTSITKIDAQSDSXST 600
           V+ PR  RFSIGSAPLTSITK DAQ     T
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGET 74


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.086
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 368 ERGSGRAPNTQTASPRALADSLMQ 297
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 109 MIRYIDEFGQTTTRMQ 156
           MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 507 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 385
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 258 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 94
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,018,036
Number of Sequences: 1657284
Number of extensions: 8391662
Number of successful extensions: 22238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22232
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)