Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F04
         (949 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    48   5e-04
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    39   0.21 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    34   6.1  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 47.6 bits (108), Expect = 5e-04
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +2

Query: 509 RGKAVCXLGALPXPRSLTRCXRSFGCGERYQL 604
           R   +C  G +P PRSLTR  RSFGCGERY+L
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 19/35 (54%), Positives = 20/35 (57%)
 Frame = +2

Query: 485 CXNXSANXRGKAVCXLGALPXPRSLTRCXRSFGCG 589
           C    A  R +AV  L ALP  RS TRC RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +3

Query: 483 SAXXNRPTXGERRFAYW 533
           +A  NRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,898,762
Number of Sequences: 1657284
Number of extensions: 2962405
Number of successful extensions: 6130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6129
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 87365783978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)