Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F03
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.20 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.35 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 595 PXPPPPPFXFXXXPPPPP 648
           P PPPPP      PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 595 PXPPPPPFXFXXXPPPPPFFFXXXXXXXLPPP 690
           P PPP P      PPPPP           PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 0.81
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 592 SPXPPPPPFXFXXXPPPPP 648
           +P P PPP      PPPPP
Sbjct: 747 APIPVPPPAPIMGGPPPPP 765



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 639 PPPLFFXXXXXXXPPPPXXXFFFFFKXGGXGXXXPPPPPP 758
           PPP          PPPP           G G   PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGV--------AGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 593 PPXXPPPPFXFXXXPPPPP 649
           PP  PPP       PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +1

Query: 601 PPPPPFXFXXXPPPPPFFFXXXXXXXLPPPXXXFFFFLXXGGGXXXXXPPPPPG 762
           PPPPP      P P P          +PPP          GG      PPPPPG
Sbjct: 733 PPPPPAVIVPTPAPAPI--------PVPPPAPIM------GG---PPPPPPPPG 769



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 593 PPXXPPPPFXFXXXPPPPPFFXFXXXXXPSPP 688
           P   PPP       PPPPP         P PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 595 PXPPPPPFXFXXXPPPPP 648
           P PPPP F     PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 593 PPXXPPPPFXFXXXPPPPPFFXFXXXXXPSPP 688
           PP  PPPP      PPPP F        P PP
Sbjct: 5   PPGNPPPP------PPPPGFEPPSQPPPPPPP 30



 Score = 23.8 bits (49), Expect(2) = 3.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 636 PPPPLFFXXXXXXXPPPP 689
           PPPP  F       PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 22.6 bits (46), Expect(2) = 3.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 458 PXNPPPXXXPPPXF 499
           P NPPP   PPP F
Sbjct: 6   PGNPPPPP-PPPGF 18



 Score = 22.2 bits (45), Expect(2) = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 587 FXPPXXPPPP 616
           F PP  PPPP
Sbjct: 18  FEPPSQPPPP 27



 Score = 21.0 bits (42), Expect(2) = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 741 PPPPPP 758
           PPPPPP
Sbjct: 25  PPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/79 (30%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
 Frame = -2

Query: 610 GGXGGGXKXFFFFXXKXPPPPXXFXXXXXXXGXKKKKKXGGGXXXGGGVXWGKPPXF-XN 434
           G  GGG   F       PP P  F       G        GG   G G   G P  F   
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243

Query: 433 PXFFXKXXPXGGGGPPXXG 377
           P  F       GGGP   G
Sbjct: 244 PGGFGGGLGGFGGGPGGFG 262


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 592  SPXPPPPPFXFXXXPPPPP 648
            +P PPPPP      P  PP
Sbjct: 1704 APTPPPPPMSVPPPPSAPP 1722


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 678 PPPPXXXFFFFFKXGGXGXXXPPPPPP 758
           PPPP             G   PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 448 GVFPXXPPPPXXXPP 492
           GV P  PPPP   PP
Sbjct: 939 GVMPAFPPPPPPPPP 953


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 8.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 455 SPXNPPPXXXPPP 493
           S  NPPP   PPP
Sbjct: 185 SDYNPPPPPPPPP 197



 Score = 20.6 bits (41), Expect(2) = 8.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 593 PPXXPPPPFXFXXXPPPPP 649
           PP   P        PPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPP 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,994
Number of Sequences: 5004
Number of extensions: 46804
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)