Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F01
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.33 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   9.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   9.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -1

Query: 659 RGDPP-PXXGXXXPPPGGGXXXPPPPXP 579
           RG PP P  G   PPPGG    PP   P
Sbjct: 36  RGSPPNPSQG---PPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = -3

Query: 411 PXXXGPPPPRXPXXXPKKXXFXPPPPXGGGPXP 313
           P    P P   P   P+      PP    GP P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 937 APPPPPXGXXGPTLSPLN 884
           APPPPP    GP  + L+
Sbjct: 342 APPPPPPSSSGPDSAKLD 359



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 491 PXKXPPPPPP 462
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 366 PKKXXFXPPPPXGGGP 319
           P K    PPPP   GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 491 PXKXPPPPPP 462
           P K  PPPPP
Sbjct: 338 PPKPAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 939  EPPPPPP 919
            EPPPPPP
Sbjct: 1858 EPPPPPP 1864



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 622  PPPGGXXPXPPPP 584
            P  G   P PPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 478  PXPPPPPXK 452
            P PPPPP +
Sbjct: 1857 PEPPPPPPR 1865


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 493  FRXKXPXPPPPP 458
            +R + P PPPPP
Sbjct: 1350 WRQQQPPPPPPP 1361



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 939  EPPPPPP 919
            +PPPPPP
Sbjct: 1354 QPPPPPP 1360


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -3

Query: 399 GPPPPRXPXXXPKKXXFXPPPPXGGGP 319
           GPP P      P    F PP     GP
Sbjct: 151 GPPTPFPRFIPPNAYRFRPPQNPRFGP 177


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -3

Query: 399 GPPPPRXPXXXPKKXXFXPPPPXGGGP 319
           GPP P      P    F PP     GP
Sbjct: 151 GPPTPFPRFIPPNAYRFRPPQNPRFGP 177


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -3

Query: 399 GPPPPRXPXXXPKKXXFXPPPPXGGGP 319
           GPP P      P    F PP     GP
Sbjct: 389 GPPTPFPRFIPPNAYRFRPPQNPRFGP 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,425
Number of Sequences: 438
Number of extensions: 6931
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)