Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E24
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.25 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.63 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 596 PPPPPPXXXKKXXPPP 643
           PPPPPP       PPP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect(2) = 0.14
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 596 PPPPPPXXXKKXXPPP 643
           PPPPPP       PPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778



 Score = 23.8 bits (49), Expect(2) = 0.14
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 755 PPPPPPP 775
           PPPPPPP
Sbjct: 777 PPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect(2) = 0.25
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 596 PPPPPPXXXKKXXPP 640
           PPPPPP    +  PP
Sbjct: 312 PPPPPPSRRNRGKPP 326



 Score = 23.8 bits (49), Expect(2) = 0.25
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 755 PPPPPPP 775
           PPPPPPP
Sbjct: 337 PPPPPPP 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect(2) = 0.63
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 754 PPPPPPPXXXXKKK 795
           PPPPPPP    K+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 596 PPPPPPXXXKKXXPPP 643
           PPPPPP       PPP
Sbjct: 11  PPPPPPGFEPPSQPPP 26



 Score = 20.6 bits (41), Expect(2) = 0.63
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 595 PXXPPPXXXKKKXPPPP 645
           P  PP      + PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 754  PPPPPPPXXXXKKKXXXXXFFFF 822
            PPPPPPP    +KK      + F
Sbjct: 1095 PPPPPPPPAEVEKKDLYLALYDF 1117



 Score = 22.2 bits (45), Expect(2) = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 596  PPPPPPXXXKK 628
            PPPPPP   +K
Sbjct: 1097 PPPPPPAEVEK 1107



 Score = 21.4 bits (43), Expect(2) = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 581  KXXXXPPPPPP 613
            K    PPPPPP
Sbjct: 1090 KPSAVPPPPPP 1100


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 596  PPPPPPXXXKKXXPP 640
            PPPPPP    K  PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,103
Number of Sequences: 5004
Number of extensions: 22599
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)