Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_E24
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 27 0.42
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 26 0.54
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 0.91
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 0.91
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 0.94
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 26 1.1
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 24 2.6
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 24 2.6
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 23 3.8
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 4.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 24 4.4
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 24 4.4
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 24 4.6
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 24 5.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 24 6.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 24 6.2
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 28 7.0
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 27.1 bits (57), Expect(2) = 0.42
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PPP
Sbjct: 538 PPPPPPVGMANGGPPP 553
Score = 23.8 bits (49), Expect(2) = 0.42
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 576 PPPPPPP 582
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 26.2 bits (55), Expect(2) = 0.54
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PPP
Sbjct: 1343 PPPPPPSDDLTPVPPP 1358
Score = 24.2 bits (50), Expect(2) = 0.54
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 755 PPPPPPPXXXXK 790
PPPPPPP K
Sbjct: 1356 PPPPPPPPTMSK 1367
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 772 PPPPPPGGFKGGPPPP 787
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 771 PPPPPPPGGFKGGPPP 786
Score = 25.8 bits (54), Expect(2) = 0.91
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PPP
Sbjct: 759 PPPPPPPGGCPPPPPP 774
Score = 23.8 bits (49), Expect(2) = 0.91
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 769 PPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 772 PPPPPPGGFKGGPPPP 787
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 771 PPPPPPPGGFKGGPPP 786
Score = 25.8 bits (54), Expect(2) = 0.91
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PPP
Sbjct: 759 PPPPPPPGGCPPPPPP 774
Score = 23.8 bits (49), Expect(2) = 0.91
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 769 PPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 355 PPPPPPGGFKGGPPPP 370
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 354 PPPPPPPGGFKGGPPP 369
Score = 25.8 bits (54), Expect(2) = 0.94
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PPP
Sbjct: 342 PPPPPPPGGCPPPPPP 357
Score = 23.8 bits (49), Expect(2) = 0.94
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 352 PPPPPPP 358
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 25.8 bits (54), Expect(2) = 1.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PPP
Sbjct: 41 PPPPPPCGGGYEAPPP 56
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 54 PPPPPPP 60
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 595 PXXPPPXXXKKKXPPPP 645
P PPP + PPPP
Sbjct: 296 PIPPPPIKEESPPPPPP 312
Score = 23.8 bits (49), Expect(2) = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 754 PPPPPPP 774
PPPPPPP
Sbjct: 307 PPPPPPP 313
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 24.2 bits (50), Expect(2) = 2.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 595 PXXPPPXXXKKKXPPPP 645
P PPP + PPPP
Sbjct: 296 PIPPPPIKEESPPPPPP 312
Score = 23.8 bits (49), Expect(2) = 2.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 754 PPPPPPP 774
PPPPPPP
Sbjct: 307 PPPPPPP 313
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 23.0 bits (47), Expect(3) = 3.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +1
Query: 595 PXXPPPXXXKKKXPPPP 645
P PPP PPPP
Sbjct: 69 PICPPPPPPPMPCPPPP 85
Score = 21.8 bits (44), Expect(3) = 3.8
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +1
Query: 451 PXXXXXPPPKXXKXXXPPPP 510
P PPP PPPP
Sbjct: 50 PMPVCPPPPPCPAQFCPPPP 69
Score = 21.0 bits (42), Expect(3) = 3.8
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 757 PPPPPP 774
PPPPPP
Sbjct: 82 PPPPPP 87
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 87 PPPPPPPTLKAPPPPP 102
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP K PPP
Sbjct: 86 PPPPPPPPTLKAPPPP 101
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 23.8 bits (49), Expect(2) = 7.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 577 PPPPPPP 583
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 578 PPPPPPP 584
Score = 23.8 bits (49), Expect(2) = 5.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 754 PPPPPPP 774
PPPPPPP
Sbjct: 590 PPPPPPP 596
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPPP PP
Sbjct: 562 PPPPPPLPQNLSGAPP 577
Score = 23.0 bits (47), Expect(2) = 5.7
Identities = 15/62 (24%), Positives = 15/62 (24%), Gaps = 3/62 (4%)
Frame = +1
Query: 469 PPPKXXKXXXPPPPXXX---GGGKKXXXXXXXXXXXXXXXKKXXXPXXPPPXXXKKKXPP 639
P P PPPP G P PPP PP
Sbjct: 533 PAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
Query: 640 PP 645
PP
Sbjct: 593 PP 594
Score = 22.6 bits (46), Expect(2) = 7.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
PPPPP PPP
Sbjct: 563 PPPPPLPQNLSGAPPP 578
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 506 PPPPPPP 512
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 581 KXXXXPPPPPPXXXKKXXPPP 643
K PPP PP PPP
Sbjct: 487 KSPPPPPPLPPIATPSSVPPP 507
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 23.8 bits (49), Expect(2) = 4.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 516 PPPPPPP 522
Score = 23.4 bits (48), Expect(2) = 4.6
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 581 KXXXXPPPPPPXXXKKXXPPP 643
K PPP PP PPP
Sbjct: 494 KSPPPPPPLPPIATPSSVPPP 514
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 23.8 bits (49), Expect(2) = 5.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 64 PPPPPPP 70
Score = 23.4 bits (48), Expect(2) = 5.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 596 PPPPPPXXXKKXXPPP 643
P PPPP + PPP
Sbjct: 44 PCPPPPICPPQFCPPP 59
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 23.8 bits (49), Expect(2) = 6.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 307 PPPPPPP 313
Score = 23.0 bits (47), Expect(2) = 6.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 599 PPPPPXXXKKXXPPP 643
PPPPP PPP
Sbjct: 297 PPPPPSSGMWPPPPP 311
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 23.8 bits (49), Expect(2) = 6.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 755 PPPPPPP 775
PPPPPPP
Sbjct: 297 PPPPPPP 303
Score = 23.0 bits (47), Expect(2) = 6.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 599 PPPPPXXXKKXXPPP 643
PPPPP PPP
Sbjct: 287 PPPPPSSGMWPPPPP 301
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Frame = +1
Query: 469 PPPKXXKXXXPPPPXXXGG--GKKXXXXXXXXXXXXXXXKKXXXPXXPPPXXX---KKKX 633
PPP PPP GKK P PPP K
Sbjct: 113 PPPTASSAPPVPPPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPT 172
Query: 634 PPPPXXKKKKXFF 672
PPPP ++K F
Sbjct: 173 PPPPPPAQQKPSF 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,081,545
Number of Sequences: 27780
Number of extensions: 233184
Number of successful extensions: 6371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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