Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E21
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0493 + 14691853-14692383                                         29   3.8  
08_01_0534 - 4635122-4635380,4635716-4635837                           29   5.1  
09_03_0207 - 13486694-13487047                                         29   6.7  
02_04_0133 + 20101553-20103070                                         28   8.9  

>05_03_0493 + 14691853-14692383
          Length = 176

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 188 SRGRATSLDAAGRRTGPTRPQPHVGAVALHAGXPGTVPLRCPSA 57
           S G +T  + AG R+    P+P   A+ +    PG V   CPSA
Sbjct: 33  SGGGSTLFEPAGDRS--VTPEPTRAAIVIMVAAPGAVVTCCPSA 74


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 125 AGVAWARCDGRRRPATSLGLWTG 193
           +GV W  C GR    +++G WTG
Sbjct: 71  SGVKWKSCGGRTGSRSAVGRWTG 93


>09_03_0207 - 13486694-13487047
          Length = 117

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +3

Query: 120 MWLGSRGPGATAGGVQRRRSASGLAAXTDVTRLDDSRPDKR 242
           M  GSRG G  + G  RRR + GLAA  D+      R D+R
Sbjct: 16  MQSGSRGGGCRSRG--RRRWSPGLAADLDLATEGGRRGDRR 54


>02_04_0133 + 20101553-20103070
          Length = 505

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +3

Query: 69  AQRDCARXTRVQRDRPNMWLGSRGPGATAGGVQRRRSASGLAAXTDVTRLDDS 227
           A  DC      +R    +  G   P   A   +  RS SGL A  D  RL +S
Sbjct: 243 ATSDCIEEENRRRVAAALAAGGAAPSVAASLARVMRSGSGLEARVDAARLVES 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,572
Number of Sequences: 37544
Number of extensions: 359168
Number of successful extensions: 1284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)