Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E19
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.72 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 542 PSLRRGRCPTPSRERERCPSHRPVPFARRSRTRAKKPTRRKSXK 673
           P + R   P+   ERE   S +P P    S++      R++S K
Sbjct: 341 PCILRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSK 384


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 50  QRDEYKHTKLYPSD 91
           Q  EY HTK YP D
Sbjct: 59  QSGEYDHTKNYPFD 72


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 50 QRDEYKHTKLYPSD 91
          Q  EY HTK YP D
Sbjct: 56 QSGEYDHTKNYPFD 69


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 532 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 654
           G  T T      D +  E  +PI +TG   K I ++ E  N
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREEIKN 181


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 508 VESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEAN 654
           +E R    G  TIT      D +  E  + I +TG   K I ++ E  N
Sbjct: 133 LEIRRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSKPIFEREEIKN 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,288
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)