Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E17
         (953 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128586-1|AAI28587.1|  748|Homo sapiens SNX26 protein protein.        31   4.7  
AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens ...    31   4.7  
AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.             31   4.7  
BX537685-1|CAD97811.1|  520|Homo sapiens hypothetical protein pr...    31   8.2  

>BC128586-1|AAI28587.1|  748|Homo sapiens SNX26 protein protein.
          Length = 748

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 787 GRCTQLGANDLHRTEIPTA*AMRSATLPEGRKADRYPVSGRXGT-GERTRELPGGNAWYL 611
           G C       L   +  T   + + T P   KA   P   R G  GE+ R+ PGG++W  
Sbjct: 535 GSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGEKQRK-PGGSSWKT 593

Query: 610 YSPVGXSP 587
           +  +G  P
Sbjct: 594 FFALGRGP 601


>AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45322 fis, clone BRHIP3006294, moderately
           similar to Mus musculus Cdc42 GTPase-activating protein
           (Cdgap). ).
          Length = 1007

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 787 GRCTQLGANDLHRTEIPTA*AMRSATLPEGRKADRYPVSGRXGT-GERTRELPGGNAWYL 611
           G C       L   +  T   + + T P   KA   P   R G  GE+ R+ PGG++W  
Sbjct: 399 GSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGEKQRK-PGGSSWKT 457

Query: 610 YSPVGXSP 587
           +  +G  P
Sbjct: 458 FFALGRGP 465


>AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.
          Length = 903

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 787 GRCTQLGANDLHRTEIPTA*AMRSATLPEGRKADRYPVSGRXGT-GERTRELPGGNAWYL 611
           G C       L   +  T   + + T P   KA   P   R G  GE+ R+ PGG++W  
Sbjct: 273 GSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGEKQRK-PGGSSWKT 331

Query: 610 YSPVGXSP 587
           +  +G  P
Sbjct: 332 FFALGRGP 339


>BX537685-1|CAD97811.1|  520|Homo sapiens hypothetical protein
           protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 569 RRSSQRWRXPDRTIKIPGVSPWKLPRALSCSXPAAYRIPVRLSPFGKR 712
           RR  ++W    R ++IP VSP  L  A   S P  + +P RL P G++
Sbjct: 13  RRDLKKWDVQKRRLEIPAVSPSTL-YATEVS-PCPWFLPGRLLPLGEK 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,944,068
Number of Sequences: 237096
Number of extensions: 2279491
Number of successful extensions: 10177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10177
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)