Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E17
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.4  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 779 HTAWSERPTPN*DTYSVSYEKRHASRREKGGQVSGKRQXRNRRAH 645
           H   S  P P+ D  +V+  KR  +++ +G + +     +NRRAH
Sbjct: 22  HGYASTMPMPD-DMRTVT--KRPKTKKSQGSRTTHNELEKNRRAH 63


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 613 DTRRFPLEAPSCALLFRXCR 672
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 669 PLTGYLSAFLPSGSVALLIAHAVGISVRCRSFAPSCVHL 785
           PLTG LS    S +        +GIS R  +F+   +H+
Sbjct: 104 PLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIHV 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,031
Number of Sequences: 438
Number of extensions: 4262
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)