Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E16
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    31   1.2  
08_02_0648 - 19694538-19696569,19697151-19697998                       30   2.9  

>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
 Frame = +1

Query: 439 HFAPHFPNIKFQPTEFDETLLGSIKYYATECPTKNILLPIQLDICTDLVHYGFLEESID- 615
           +F+ + P    Q    +E LL + K Y          +P  L  CT L+       +   
Sbjct: 266 NFSGNIPESIGQLNRLEELLLNNNKMYGG--------IPSTLSNCTSLITINLRSNNFSG 317

Query: 616 YVYNANMIHISPYECTIGLFKN-AGCYLKPNALMILYGPLVRWSNTPDSNVQLML 777
            + N N  ++   +    L+ N +G +  PN L+++YG + RW +   S   L+L
Sbjct: 318 ELVNVNFSNLPNLKALDLLWNNFSGSF--PNCLLLIYGKIPRWLSKLSSLEMLIL 370


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 196 FFKNLNYYKFLNN-WSMSKLKDFSCAFHGNEN 288
           F +N +Y+  +++ WS    KD  CAF  N N
Sbjct: 278 FLENKSYFVLIDDVWSKQAWKDIQCAFPSNNN 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,919,182
Number of Sequences: 37544
Number of extensions: 367607
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)