Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E13
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    29   0.68 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   4.8  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   8.4  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    26   8.4  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   8.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
 Frame = +3

Query: 147 FPGKLCKLIR*MI*KMCPIWPLHLIVLYVLALCPLWVI------CQNVPRLTA-VFSPPS 305
           FPG+L   +R +   M P   LH    +++   PL  I        +VP LT  +F   +
Sbjct: 242 FPGELNSDLRKLAVNMVPFPRLHF---FMVGFAPLAAIGSSSFQAVSVPELTQQMFDANN 298

Query: 306 IIVKMD----EYKYVDVSIEG--SGLELNDAFKISSQNEQLAWAEWNSSNLYEKHDSTWK 467
           ++V  D     Y  V     G  S  E+++  +         + EW   N+ +   S   
Sbjct: 299 MMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358

Query: 468 GKIRINGNFIGRTNLVLEV-KRDADTFS 548
             ++++  FIG +  + E+ +R  D FS
Sbjct: 359 KDLKMSATFIGNSTSIQEIFRRLGDQFS 386


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 426  NSSNLYEKHDSTWKGKIRINGNFIGRTNLVL---EVKRDADTFSVTNGTVPVVI 578
            NS+ L+E+H    +  I+ +   + R        EVK + D F V   TVP  +
Sbjct: 1340 NSTLLWERHPIAMRSAIKTHNTIMRRQLRATGGYEVKTEGDAFMVCFQTVPAAL 1393


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 424 HSAQASCSFCELILNASFNSKPEPSIDTSTYLYSSILT 311
           HSA+ +C    + L  SFN+ P    D  T +Y + L+
Sbjct: 112 HSAKQNCDVEVVYLGGSFNAFPPLQNDRITVVYMNELS 149


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 689 TSSSXRSDPPXEWSDNS 739
           TSSS RSD P EW++++
Sbjct: 155 TSSSHRSDLPNEWTNST 171


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 297 PPSIIVKMDEYKYVDVSIEGSGLELNDAFKIS 392
           P ++IVK  +++Y  V+ E  GL++ D    S
Sbjct: 522 PEAVIVKNSKFRYQQVAPETFGLDILDILNAS 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,053
Number of Sequences: 5004
Number of extensions: 74184
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)