Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_E13
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024856-1|ABB51172.1| 334|Caenorhabditis elegans Hypothetical ... 40 0.002
AF026210-5|AAB71287.1| 632|Caenorhabditis elegans Hypothetical ... 29 3.4
AF026210-4|AAT81192.1| 627|Caenorhabditis elegans Hypothetical ... 29 3.4
AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical ... 29 4.5
Z82269-8|CAJ76946.1| 185|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z82269-4|CAB70200.2| 633|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 29 6.0
AL021487-16|CAJ76947.1| 185|Caenorhabditis elegans Hypothetical... 29 6.0
AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical... 29 6.0
AL021487-14|CAA16360.3| 633|Caenorhabditis elegans Hypothetical... 29 6.0
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 28 7.9
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 28 7.9
AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical... 28 7.9
AC006615-8|AAK68234.1| 117|Caenorhabditis elegans Hesitation be... 28 7.9
AB067680-1|BAC00782.1| 117|Caenorhabditis elegans HEN-1 protein. 28 7.9
>AC024856-1|ABB51172.1| 334|Caenorhabditis elegans Hypothetical
protein Y71G10AR.4 protein.
Length = 334
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 694 IKRXIGPAIXMVGQFLFMPLSSFGLGYVIF-PNS-PAMRXGMFFTGRTPRG 840
+K+ + P I + QF+ MPL S+ + Y IF P +M G+F TG +P G
Sbjct: 212 LKKPVAPGIGLFAQFIIMPLLSYLIAYAIFMPRGLYSMALGLFVTGCSPGG 262
Score = 28.3 bits (60), Expect = 7.9
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Frame = +3
Query: 207 PLHLIVLYVLALCPLWVICQNVPRLTAVFSPPSIIVKMDEYKYVDVSI---------EGS 359
P+ LI+ +L L V + +T +SP SI ++EY DV++ E
Sbjct: 10 PMVLIIRLLLQLSST-VSAELSRSMTLTYSPQSIH-DLEEYGSTDVNVTLKFPKNEFETE 67
Query: 360 GLELNDAFKISSQNEQLAWAEWNSSNL----YEKHDSTWKGK--IRINGNFIGRTNLVLE 521
+E + A ++S + + A A++N+ L + + ++ + I INGN +G+T + +
Sbjct: 68 NIE-HYALSVNSFHPETATADYNTEKLKTEQFRLNGQFYETETIITINGNLLGKTAMKMR 126
Query: 522 VKRDADTFSVT 554
+ A+ ++ T
Sbjct: 127 LVPAAEYYNET 137
>AF026210-5|AAB71287.1| 632|Caenorhabditis elegans Hypothetical
protein F48A11.5a protein.
Length = 632
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 263 PECAQTNGGLLASKYNRQN 319
PE A+ NGG+LAS++N N
Sbjct: 188 PESARQNGGILASRHNNHN 206
>AF026210-4|AAT81192.1| 627|Caenorhabditis elegans Hypothetical
protein F48A11.5b protein.
Length = 627
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 263 PECAQTNGGLLASKYNRQN 319
PE A+ NGG+LAS++N N
Sbjct: 183 PESARQNGGILASRHNNHN 201
>AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical
protein F14D2.7 protein.
Length = 471
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 783 EYHVAQTEGTEWHKKELSDHSYGGSDRSLDDVTHPSASASHIQN 652
EY++ QTE +K +++S +DD H S S ++N
Sbjct: 417 EYNIIQTEDNNEEEKHYTEYSIDQDFECIDDDKHYSGKHSPVEN 460
>Z82269-8|CAJ76946.1| 185|Caenorhabditis elegans Hypothetical
protein Y45F10B.13c protein.
Length = 185
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 396 QNEQLAWAEWNSSNLYEKHDSTWKGKI 476
++E W + + L EKH++TWKG++
Sbjct: 111 KDENWKWRDESGRLLDEKHNNTWKGEL 137
>Z82269-5|CAH60772.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 396 QNEQLAWAEWNSSNLYEKHDSTWKGKI 476
++E W + + L EKH++TWKG++
Sbjct: 544 KDENWKWRDESGRLLDEKHNNTWKGEL 570
>Z82269-4|CAB70200.2| 633|Caenorhabditis elegans Hypothetical
protein Y45F10B.13a protein.
Length = 633
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 396 QNEQLAWAEWNSSNLYEKHDSTWKGKI 476
++E W + + L EKH++TWKG++
Sbjct: 559 KDENWKWRDESGRLLDEKHNNTWKGEL 585
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +3
Query: 255 VICQNVPRLTAVFSPPSIIVKM---DEYKYVDVSI-EGSGLEL 371
++C+N+PRL ++ P I + D+YK D+ I GS L+L
Sbjct: 135 ILCKNIPRLVPGWTQPITIGRHAFGDQYKCTDLVIPSGSTLQL 177
>AL021487-16|CAJ76947.1| 185|Caenorhabditis elegans Hypothetical
protein Y45F10B.13c protein.
Length = 185
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 396 QNEQLAWAEWNSSNLYEKHDSTWKGKI 476
++E W + + L EKH++TWKG++
Sbjct: 111 KDENWKWRDESGRLLDEKHNNTWKGEL 137
>AL021487-15|CAH60766.1| 618|Caenorhabditis elegans Hypothetical
protein Y45F10B.13b protein.
Length = 618
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 396 QNEQLAWAEWNSSNLYEKHDSTWKGKI 476
++E W + + L EKH++TWKG++
Sbjct: 544 KDENWKWRDESGRLLDEKHNNTWKGEL 570
>AL021487-14|CAA16360.3| 633|Caenorhabditis elegans Hypothetical
protein Y45F10B.13a protein.
Length = 633
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 396 QNEQLAWAEWNSSNLYEKHDSTWKGKI 476
++E W + + L EKH++TWKG++
Sbjct: 559 KDENWKWRDESGRLLDEKHNNTWKGEL 585
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 285 AVFSPPSIIVKMDEYKYVDVSIEGSGLELNDA--FKISS 395
A F P IVK K VD+ I+ S ++L+D F+ SS
Sbjct: 639 AFFPAPGFIVKKKSDKRVDIRIDSSYIDLHDENNFRTSS 677
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 285 AVFSPPSIIVKMDEYKYVDVSIEGSGLELNDA--FKISS 395
A F P IVK K VD+ I+ S ++L+D F+ SS
Sbjct: 639 AFFPAPGFIVKKKSDKRVDIRIDSSYIDLHDENNFRTSS 677
>AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical
protein ZK973.1 protein.
Length = 745
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +3
Query: 282 TAVFSPPSIIVKMDEYKYVDVSIEGSGLELNDAFKISSQNEQLAWAEWNSSNLY 443
TA P +V M + +G G++L + ++ + + +A N +N Y
Sbjct: 352 TAFLKPTGEVVDMSSFSIYGTRFDGGGVDLLKKWSQQTERKDIVFAIGNGTNTY 405
>AC006615-8|AAK68234.1| 117|Caenorhabditis elegans Hesitation
behavior protein 1 protein.
Length = 117
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 599 RHDIHHQRCCVHSFNLYQFWMCDALADGCVTSSSXRSDPPXEWSDNSFLC 748
RH + C +H N + W C LAD C + ++D P +N F C
Sbjct: 49 RHGNKYIPCPIHDINDPRNWPCIKLADLC----NGKADCPNGDDENYFQC 94
>AB067680-1|BAC00782.1| 117|Caenorhabditis elegans HEN-1 protein.
Length = 117
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 599 RHDIHHQRCCVHSFNLYQFWMCDALADGCVTSSSXRSDPPXEWSDNSFLC 748
RH + C +H N + W C LAD C + ++D P +N F C
Sbjct: 49 RHGNKYIPCPIHDINDPRNWPCIKLADLC----NGKADCPNGDDENYFQC 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,755
Number of Sequences: 27780
Number of extensions: 431621
Number of successful extensions: 1262
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -