Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E10
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    29   3.8  
08_02_0709 - 20256705-20257133                                         29   6.7  
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834...    29   6.7  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    28   8.9  
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405...    28   8.9  
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    28   8.9  

>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
 Frame = +1

Query: 145 LATMYEWNYGSGLKYPV---GRIST-------SNLDAQRVGGFVGAVKDIALMFKPPLLR 294
           L  MY WNYGS LKY     G+IS        S L   RV G +G V +  +   P +  
Sbjct: 596 LCIMYTWNYGSVLKYQSEMRGKISLDFILDLGSTLGTVRVPG-IGLVYNELVQGIPSIFG 654

Query: 295 CVFISHTSMFAVFMVSSGLYVWVP 366
            + ++  +M +  +     YV VP
Sbjct: 655 HLLVTLPAMHSTIVFVCIKYVPVP 678


>08_02_0709 - 20256705-20257133
          Length = 142

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 189 SGGKDIDVKFRRPKSWRIRRSCEGHCPNVQATPP*MCFHLTH 314
           +G +D   + RR + W +RR   GH   V A P     HL H
Sbjct: 65  AGVEDFVARDRRRRRWWLRRRTRGHSGAVAAGPGAAHRHLLH 106


>04_04_0204 +
           23582239-23582338,23582866-23583213,23583357-23583472,
           23583565-23584003,23584165-23584203,23584282-23584569,
           23584667-23584806,23585080-23585563,23585828-23586090
          Length = 738

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 250 AVKDIALMFKPPLLRCVFISHTSMFAVFMVSSGLYVWVPDILNSILRD-STDQNITICQI 426
           AV+DIA  FKPP +  + + H S ++ F +S   Y++   +   ++ D  +   ++    
Sbjct: 170 AVEDIASKFKPPGM-WLNVQHDSFYSQFNLSMSNYIF--SVSKRVIVDYISSPEVSFLTK 226

Query: 427 ISDKFQNAT 453
           +S K  N T
Sbjct: 227 VSGKLSNNT 235


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 26/82 (31%), Positives = 38/82 (46%)
 Frame = -2

Query: 548 RYVTANTAPMAIEIGNTETDTSARQLDPIGSVVAFWNLSDIIWHMVMF*SVESRRILLRI 369
           R +  NT+   + I   ET T    LD   S+ AFW+ S +          E+RRI L+ 
Sbjct: 222 RMLDPNTS-RTLRIYPLETVTRWDVLD--SSIFAFWSKSSV--------DFEARRIRLKS 270

Query: 368 SGTHTYRPLDTIKTANIDVCEM 303
           +   T   LDT+  A++   EM
Sbjct: 271 NSYTTNTILDTVTAASVQFKEM 292


>05_07_0260 -
           28739035-28739085,28739316-28739596,28740545-28740572,
           28740653-28740749,28741216-28741272,28741353-28741415,
           28741533-28741621,28741779-28741865,28742041-28742162,
           28742245-28742500,28742595-28742744,28743120-28743278,
           28743820-28743892,28743968-28744024,28744115-28744243,
           28744469-28744560,28745220-28745252
          Length = 607

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 FLLANKGPEAALPVLATMYEWNYGSGL 183
           FLL  K PE +   L  ++EW++ SGL
Sbjct: 314 FLLGYKDPEPSKANLPLLHEWHFRSGL 340


>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 FLLANKGPEAALPVLATMYEWNYGSGL 183
           FLL  K PE +   L  ++EW++ SGL
Sbjct: 313 FLLGYKDPEPSKANLPLLHEWHFRSGL 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,106
Number of Sequences: 37544
Number of extensions: 388782
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)