Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E10
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-7|ABP57814.1|  178|Caenorhabditis elegans Hypothetical ...    34   0.16 
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    29   3.5  
AL009246-4|CAA15838.2|  368|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine re...    28   8.0  

>AC024756-7|ABP57814.1|  178|Caenorhabditis elegans Hypothetical
           protein Y34D9A.8b protein.
          Length = 178

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 416 YARLYRINSRMQPRTQWDRAAALTCLSPCSRSRWPWA 526
           +  +YR+NS+ +P++  DR A    L  C R  W WA
Sbjct: 8   FLMIYRVNSQYEPQSNIDRLAQRPVLPQCPR-EWEWA 43


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 400 DQNITICQIISDKFQNATTDPMGSSCRADVSVSVFPISMAMGAVFAVTYLAIGFFINKIG 579
           +  +   Q  S   Q  TT    S   AD     +PI +A GA++   ++AI F +  +G
Sbjct: 172 NNRLNTIQAESSMMQFLTTLERPSESIADFKDFQYPILIAQGAIWIAIFVAICFGVRFVG 231

Query: 580 RKTLY 594
           +   +
Sbjct: 232 KTVAF 236


>AL009246-4|CAA15838.2|  368|Caenorhabditis elegans Hypothetical
           protein C47F8.5 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 363 YPHVQ-TTRYHKNGKHRCV*DENTSKEGW 280
           Y +VQ +++YH N K + V +EN ++ GW
Sbjct: 31  YRNVQNSSQYHANSKGKFVFEENCTRSGW 59


>AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein62 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 299 FSSHTHLCLPFLWYRVVCTCGYRISSTVFCATRPIRT 409
           F + TH CL      V+ T  Y+I S VFC  R  +T
Sbjct: 86  FGASTHFCLTM----VIATIIYQIESMVFCFVRKHQT 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,976
Number of Sequences: 27780
Number of extensions: 303566
Number of successful extensions: 907
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)