Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E10
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.23 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   1.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   5.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 284 PSLD--VFSSHTHLCLPFLWYRVVC 352
           PS++  VF+S T LC+PF  Y  VC
Sbjct: 135 PSVECIVFNSGTILCVPFTTYTPVC 159


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 230 LWASKFDVDIL--PTGYFNPDP*FHSYIVAKTGNAASGPLLASRNFGLSGRNSRIKAAAR 57
           ++  +F  D++  PT Y + +P       A TGN     L++    G+   N+R++A   
Sbjct: 87  IYGGQFVRDLIWTPTVYVSNEP-----SSAITGNNVKDVLVSIDPSGMVRLNTRLQATLN 141

Query: 56  PGXXLKXFP 30
            G  L+ FP
Sbjct: 142 CGLRLEKFP 150


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 109 LANKGPEAALPVLATMYEWNY 171
           + N GPEAA    A  Y +NY
Sbjct: 243 IVNNGPEAAKMAKAFTYTYNY 263


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 366 RYPHVQTTRYHKNGKHRCV*DENTSKE 286
           RYP+   T Y+KN    C  ++  +K+
Sbjct: 437 RYPNASVTPYNKNYTKFCSTEKRLTKQ 463


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 302 SSHTHLCLPFLWYRVVCTCGYRISSTVFCATRPIRT 409
           S H  L L ++ +  +   G  +   +FCA + +RT
Sbjct: 46  SLHYLLALLYILFTFLALLGNGLVIWIFCAAKSLRT 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,832
Number of Sequences: 438
Number of extensions: 4009
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)