Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E07
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    32   0.52 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.4  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = -2

Query: 692 PPFXFWGXGXPXKKKKILPXXPPXGGXKXXNPPXXGXXXPPXPXKPRXPPXLGXKKXG 519
           PP    G   P      +P  PP  G     PP  G    P P +P+ P      K G
Sbjct: 87  PPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTPVNPALAKLG 144


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -2

Query: 668 GXPXKKKKILPXXPPXGGXKXXNPPXXGXXXPPXPXKPRXPPXLG 534
           G P       P  PP GG    +PP      PP P  PR  P  G
Sbjct: 270 GSPPPPPTGSPPPPPAGG----SPPPPRAGSPPPPPPPRGSPPTG 310



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 666 GXPXKKKNFARXPPPXGXKXKXPPXXGGXXPPXPXXTPXXP 544
           G P   +  +  PPP G     PP  GG  PP    +P  P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPP--PPPAGGSPPPPRAGSPPPP 300


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -2

Query: 668 GXPXKKKKILPXXPPXGGXKXXNPPXXGXXXPPXPXKPRXPPXLG 534
           G P       P  PP GG    +PP      PP P  PR  P  G
Sbjct: 291 GSPPPPPTGSPPPPPAGG----SPPPPRAGSPPPPPPPRGSPPTG 331



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 666 GXPXKKKNFARXPPPXGXKXKXPPXXGGXXPPXPXXTPXXP 544
           G P   +  +  PPP G     PP  GG  PP    +P  P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPP--PPPAGGSPPPPRAGSPPPP 321


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -2

Query: 668 GXPXKKKKILPXXPPXGGXKXXNPPXXGXXXPPXPXKPRXPPXLG 534
           G P       P  PP GG    +PP      PP P  PR  P  G
Sbjct: 276 GSPPPPPTGSPPPPPAGG----SPPPPRAGSPPPPPPPRGSPPTG 316



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 666 GXPXKKKNFARXPPPXGXKXKXPPXXGGXXPPXPXXTPXXP 544
           G P   +  +  PPP G     PP  GG  PP    +P  P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPP--PPPAGGSPPPPRAGSPPPP 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,991,790
Number of Sequences: 27780
Number of extensions: 140264
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)