Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E04
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.29 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.34 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect(2) = 0.29
 Identities = 32/131 (24%), Positives = 36/131 (27%), Gaps = 2/131 (1%)
 Frame = +3

Query: 480 PPPPXPXXXXXGGXXGXGPXXGXXXXGPGXAPPXXXXGAPPXXXXPXXGXXXAXXPXPPX 659
           PPPP P      G    G         P   PP     A      P  G   A  P PP 
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPPQG-RSAPPPPPPR 367

Query: 660 XRP-XXXDPPXXXAARAPXXGAXAXXXXXPXXXXXPETXPXXXXXGXRPXGARXP-PXGP 833
             P     PP   ++RA            P       + P     G     +  P P  P
Sbjct: 368 SAPSTGRQPPPLSSSRA------VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 834 XAPPGAXXXXP 866
             PP A    P
Sbjct: 422 SLPPSAPPSLP 432



 Score = 22.2 bits (45), Expect(2) = 0.29
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 438 PXXXXGXXXXPPNAPPPP 491
           P    G    PPN+PP P
Sbjct: 257 PPPSNGTVSSPPNSPPRP 274


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect(2) = 0.34
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 397  PPPPPPXXXPRGGXXXXP 344
            PPPPPP     GG    P
Sbjct: 948  PPPPPPLVSAAGGKFVSP 965



 Score = 23.8 bits (49), Expect(2) = 0.34
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 427 SXPXVXXXXXPPPPPP 380
           S P +     PPPPPP
Sbjct: 897 SLPTIITHPTPPPPPP 912


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -2

Query: 421 PXVXXXXXPPPPPPXXXPRGGXXXXPPHXXP 329
           P       PPPPPP     G     PP   P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 575 PXXXVGGPPXXXXXXPGXXXRXXPXPPSXPP 667
           P   +GGPP      PG      P PP  PP
Sbjct: 754 PAPIMGGPPPPPPP-PGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect(2) = 1.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 394 PPPPPXXXPRGGXXXXPPHXXPP 326
           PPPPP      G    PP   PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 21.0 bits (42), Expect(2) = 1.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 397 PPPPPP 380
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = +3

Query: 468 PPNAPPPPXPXXXXXGGXXGXGPXXGXXXXGPGXAPPXXXXGAPPXXXXPXXGXXXAXXP 647
           PP+AP PP P            P        P  APP      P     P      A   
Sbjct: 124 PPSAPAPPTPQSELR-PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182

Query: 648 XPP 656
            PP
Sbjct: 183 SPP 185


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 397  PPPPPPXXXPRGGXXXXPP 341
            PPPPPP   P+ G     P
Sbjct: 1882 PPPPPPMALPKAGPPSAAP 1900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,814
Number of Sequences: 5004
Number of extensions: 14481
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)