Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E03
         (1005 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.016
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.59 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = +1

Query: 538 PPPXXXXGXPPPPPXXXXFXXXXGGGXXXXXXXPPPPPPXXXXXGG 675
           PPP    G PPPPP           G       PPPPPP     GG
Sbjct: 752 PPPAPIMGGPPPPPPPP--------GVAGAGPPPPPPPPPAVSAGG 789



 Score = 31.1 bits (67), Expect = 0.26
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +1

Query: 520 GGXXXPPPPXXXXGXPPPPPXXXXFXXXXGGGXXXXXXXPPPPPP 654
           GG   PPPP    G  PPPP         GG           P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 30.3 bits (65), Expect = 0.45
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 517 GGGXXXPPPPXXXXGXPPPPP 579
           GG    PPPP      PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 0.78
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = +1

Query: 535 PPPPXXXXGXPPPPPXXXXFXXXXGGGXXXXXXXPPPPPPXXXXXGGG 678
           PPPP      P P P          GG       PPPPPP     G G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGG-------PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 516 GGXXXXXPPPXXXXXXPPPPP 578
           GG     PPP      PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 539 GGXXXPPPPPXXFFFXPPP 483
           GG   PPPPP      PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 565 PPPPPXXXXFXXXXGGGXXXXXXXPPPPPPXXXXXG 672
           PPPP          G G       PPPPPP     G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 565 PPPPPXXXXFXXXXGGGXXXXXXXPPPPPPXXXXXGG 675
           PPPPP          G        PPPPPP      G
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -2

Query: 653 GGGGGGXXXXXXXPPPXXXXKXXXXGGGGGXPXXXXGGGGXXXPP 519
           GGG GG       PPP         GG GG      G GG    P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG-FGGFGGFGGEGHHHGGHGGFGGGP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,405
Number of Sequences: 5004
Number of extensions: 39263
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)