Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_E02
         (947 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF115509-1|AAD41257.1|  721|Homo sapiens LRR FLI-I interacting p...    32   2.7  
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.5  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.5  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.5  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   4.6  

>AF115509-1|AAD41257.1|  721|Homo sapiens LRR FLI-I interacting
           protein 2 protein.
          Length = 721

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 616 YXPXXPNCC*SCYQWLLPVAISRVLPGWTQDDSYRIRRSGRAERGVR 476
           Y P  P     C  +   ++ +R  PG+T DD+  I  S RA RG R
Sbjct: 212 YNPYGPRTPSECSYYSSRISSARSSPGFTNDDTASIVSSDRASRGRR 258


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 387 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 259
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 387 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 259
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 387 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 259
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 331 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 417
           + R PV T+P+   L AF   GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,789,737
Number of Sequences: 237096
Number of extensions: 2242232
Number of successful extensions: 10121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10117
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)