Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D23
         (1142 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.41 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = -2

Query: 694 PXPXPPPXHXXPXPPPXXPPPXTHXHPPXPXXXPPPXPXP 575
           P P P P      P    PP  +   PP      PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.2 bits (55), Expect = 0.54
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
 Frame = -2

Query: 1141 PXXPPXXXPXXXXXXXPPXP--XPPPXXPP--PPPXTPTXXNXXP 1019
            P   P   P       PP P   PPP  PP  PP   P+     P
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
 Frame = -2

Query: 640 PPPXTHXHPPXPXXXPPPXP--XPPP 569
           P P  H  P  P    PP P   PPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = -2

Query: 1090 PXPXPPPXXPPPPPXTPTXXNXXPTXXTXXPPPXPP 983
            P P P P   P  P   +  N         PP  PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 17/70 (24%), Positives = 18/70 (25%)
 Frame = -1

Query: 1091 PXTXXPPXXPTPPXXHPXXXQPPXHPXXXXTPXXPPPPXXPXXXXXPXXXXPHPXXPNXX 912
            P    P   P P   HP   + P        P   P P  P          P     N  
Sbjct: 98   PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPR---LRREPEAEPGNNR 154

Query: 911  TTXTPPPPPP 882
                P P PP
Sbjct: 155  PVYIPQPRPP 164


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 1093 PPXPXPPPXXPPPPPXTP 1040
            PP P PPP  PPP    P
Sbjct: 338  PPKPAPPP--PPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 370  PXXPPPPPKKH 338
            P  PPPPP+ H
Sbjct: 1857 PEPPPPPPRNH 1867


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = -2

Query: 715 TPXXHTXPXPXPPPXHXXPXPPPXXPPPXTHXHPPXPXXXPPPXPXP 575
           TP  H      P   H  P      P      H P     PP  P P
Sbjct: 429 TPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGP 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.164    0.625 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,093
Number of Sequences: 438
Number of extensions: 11541
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38680821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)