Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D21
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 31 1.3
07_01_0080 + 587674-588510 26 1.8
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 30 2.3
01_06_1226 - 35518981-35519295,35519876-35520745 30 2.3
01_01_0083 + 631196-631675 30 2.3
11_01_0311 + 2322511-2323527 29 5.4
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152... 29 5.4
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 5.4
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 28 7.1
07_03_0096 + 13351665-13351833,13352383-13352446,13352524-133525... 28 9.4
04_04_1182 + 31531426-31531702,31533741-31533997,31534672-315348... 28 9.4
01_03_0005 + 11568545-11569119,11569179-11569191 28 9.4
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 697 GGGGGXIXXXXPPPPPP 747
GGGGG PPPPPP
Sbjct: 34 GGGGGGAGPTPPPPPPP 50
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPPP 696
GGGGGG PPPPP
Sbjct: 34 GGGGGGAGPTPPPPPPP 50
>07_01_0080 + 587674-588510
Length = 278
Score = 26.2 bits (55), Expect(2) = 1.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 702 GGGGXXKXXXPPPPPXP 752
GG G + PPPPP P
Sbjct: 83 GGDGMFRRPPPPPPPPP 99
Score = 22.6 bits (46), Expect(2) = 1.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 732 PPPPPXPXF 758
PPPPP P F
Sbjct: 115 PPPPPPPLF 123
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 700 GGGGXIXXXXPPPPPP 747
GGGG + PPPPPP
Sbjct: 93 GGGGWVQLPPPPPPPP 108
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPPP 696
GGGGGG F PPP P
Sbjct: 18 GGGGGGSVFPGPPPPTP 34
>01_01_0083 + 631196-631675
Length = 159
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPPP 696
GGGGGG F PPPP
Sbjct: 96 GGGGGGGGFNYPAPPPP 112
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPPP 696
GGGGGG + PPP P
Sbjct: 98 GGGGGGFNYPAPPPPNP 114
>11_01_0311 + 2322511-2323527
Length = 338
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 697 GGGGGXIXXXXPPPPPPXXXF 759
GGGG PPPPPP F
Sbjct: 125 GGGGDESGTTTPPPPPPLALF 145
>02_05_0962 +
33114226-33114684,33114806-33114853,33115166-33115286,
33115760-33116008,33116149-33116302,33116493-33116985,
33117524-33117596,33118285-33118343
Length = 551
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 697 GGGGGXIXXXXPPPPPP 747
GGGGG + PPPPP
Sbjct: 56 GGGGGFLRLRSAPPPPP 72
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = -2
Query: 758 KXXXGGGGGGXXFXXX---PPPPP 696
K GGGGGG F PPPPP
Sbjct: 49 KVSVGGGGGGGGFLRLRSAPPPPP 72
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPPP 696
GGGGGG + PP PP
Sbjct: 24 GGGGGGEFYRGPPPQPP 40
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 751 GXGGGGGXXXXLXPPPPP 698
G GGGG L PPPPP
Sbjct: 23 GGGGGGMGSPPLGPPPPP 40
>07_03_0096 +
13351665-13351833,13352383-13352446,13352524-13352581,
13353250-13353427,13353858-13353988,13355744-13355846,
13355942-13356018,13356641-13356688,13356791-13356940,
13357943-13358134
Length = 389
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 284 FWGPFLXPRGXGAPPKP 234
FWG + RG GAPP P
Sbjct: 290 FWGNMVHARGLGAPPVP 306
>04_04_1182 +
31531426-31531702,31533741-31533997,31534672-31534818,
31535974-31536111
Length = 272
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPP 699
GGGGGG PPPP
Sbjct: 54 GGGGGGMGIPPRPPPP 69
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPP 699
GGGGGG PPPP
Sbjct: 81 GGGGGGTVMYTSPPPP 96
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 744 GGGGGXXXXYXPPPPP 697
GGGGG Y PPPP
Sbjct: 81 GGGGGGTVMYTSPPPP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,776
Number of Sequences: 37544
Number of extensions: 365625
Number of successful extensions: 5653
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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