Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D21
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 30 1.6
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 2.1
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 30 2.1
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 8.4
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 28 8.4
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 28 8.4
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 649 FFFFXXXXXXXXXXXXGGGGGXIXXXXPPPPPP 747
FFF GGGGG PPPPPP
Sbjct: 18 FFFPRVTPNDGCGCGCGGGGGGGGCCAPPPPPP 50
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 751 GXGGGGGXXXXLXPPPPP 698
G GGGGG PPPPP
Sbjct: 32 GCGGGGGGGGCCAPPPPP 49
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 746 GGGGGGXXFXXXPPPPP 696
GGGGGG PPPPP
Sbjct: 34 GGGGGGGGCCAPPPPPP 50
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 640 KKXFFFFXXXXXXXXXXXXGGGGGXIXXXXPPPPPP 747
+K FF GGGG PPPPPP
Sbjct: 2 QKLIVFFTTIAAAQAFLLPSGGGGGCGCAPPPPPPP 37
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 639 KKXXFFFXXXXXXXXXXXXXGGGGGXXKXXXPPPPP 746
+K FF GGGGG PPPPP
Sbjct: 2 QKLIVFFTTIAAAQAFLLPSGGGGGCGCAPPPPPPP 37
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 640 KKXFFFFXXXXXXXXXXXXGGGGGXIXXXXPPPPPP 747
+K FF GGGG PPPPPP
Sbjct: 2 QKIVIFFAAIAVSQAFLLPSGGGGGCGCAPPPPPPP 37
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 639 KKXXFFFXXXXXXXXXXXXXGGGGGXXKXXXPPPPP 746
+K FF GGGGG PPPPP
Sbjct: 2 QKIVIFFAAIAVSQAFLLPSGGGGGCGCAPPPPPPP 37
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 751 GXGGGGGXXXXLXPPPPP 698
G GGGGG PPPPP
Sbjct: 41 GCGGGGGCGGGCAPPPPP 58
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 751 GXGGGGGXXXXLXPPPPP 698
G GGGGG PPPPP
Sbjct: 98 GCGGGGGCGGGCAPPPPP 115
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 697 GGGGGXIXXXXPPPPPP 747
GGGGG PPPPPP
Sbjct: 43 GGGGGCGGGCAPPPPPP 59
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 697 GGGGGXIXXXXPPPPPP 747
GGGGG PPPPPP
Sbjct: 100 GGGGGCGGGCAPPPPPP 116
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 640 KKXFFFFXXXXXXXXXXXXGGGGGXIXXXXPPPPPP 747
+K FF GGGG PPPPPP
Sbjct: 2 QKLIVFFTTIAAAQAFLLPSGGGGGCGCAPPPPPPP 37
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 639 KKXXFFFXXXXXXXXXXXXXGGGGGXXKXXXPPPPP 746
+K FF GGGGG PPPPP
Sbjct: 2 QKLIVFFTTIAAAQAFLLPSGGGGGCGCAPPPPPPP 37
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 745 GGGGGXXXXLXPPPPP 698
GGGGG PPPPP
Sbjct: 31 GGGGGGGDAAPPPPPP 46
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 699 GGGGGXXKXXXPPPPP 746
GGGGG PPPPP
Sbjct: 31 GGGGGGGDAAPPPPPP 46
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 697 GGGGGXIXXXXPPPPP 744
GGGGG PPPPP
Sbjct: 23 GGGGGGCGCGAPPPPP 38
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 751 GXGGGGGXXXXLXPPPPP 698
G GG GG PPPPP
Sbjct: 200 GSGGSGGGSGRFPPPPPP 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,855
Number of Sequences: 27780
Number of extensions: 185670
Number of successful extensions: 2234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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