Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D20
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 300 2e-82
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 299 3e-82
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 2.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.8
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 5.0
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.6
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 6.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 300 bits (736), Expect = 2e-82
Identities = 135/230 (58%), Positives = 173/230 (75%)
Frame = +3
Query: 87 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 266
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 267 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 446
K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 447 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 626
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 627 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 776
NGG++ DKV+WAREH EK + + S F Q+EMID I +RW
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 299 bits (735), Expect = 3e-82
Identities = 134/230 (58%), Positives = 173/230 (75%)
Frame = +3
Query: 87 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 266
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 267 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 446
K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 447 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 626
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 627 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 776
NGG++ DKV+WAREH EK + + S F Q+EMID I +RW
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 248 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 81
F N VG G+I D S + +R+VF D +G L ++SH +P V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 75 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 194
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 242
P C H + S +P + G K FP D+P S P+ + G T +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350
Query: 243 REPDRPGSKI 272
+ P++ +I
Sbjct: 351 KVPEKSNKEI 360
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 540 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 650
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 346 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 498
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,851
Number of Sequences: 5004
Number of extensions: 72141
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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