Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D19
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    48   1e-06
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    48   1e-06
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    41   2e-04

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +2

Query: 74  MXLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           M + +C+  GSK  PG G+  V+ D K F F+N K E+  L R+NPR
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 216 KVTWTVLYRRKFKKGQEEE 272
           +++WTVLYRR  KKG  EE
Sbjct: 48  RLSWTVLYRRMHKKGISEE 66



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 319 IVGASLSDIMAKRNMKPEV 375
           IVGA+L  I  KRN +PEV
Sbjct: 82  IVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +2

Query: 74  MXLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           M + +C+  GSK  PG G+  V+ D K F F+N K E+  L R+NPR
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 216 KVTWTVLYRRKFKKGQEEE 272
           +++WTVLYRR  KKG  EE
Sbjct: 48  RLSWTVLYRRMHKKGISEE 66



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 319 IVGASLSDIMAKRNMKPEV 375
           IVGA+L  I  KRN +PEV
Sbjct: 82  IVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +2

Query: 74  MXLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           M +  C        PGHG   V+ D K F F  SKC     M+RNPR
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPR 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,107
Number of Sequences: 5004
Number of extensions: 36692
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)