Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D18
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = -2

Query: 588 GXPPPPPPXKKXXPP--PP 538
           G PPPPPP     PP  PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPP 25



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
 Frame = -2

Query: 597 GXXGXPPPPP---PXKKXXPPPP 538
           G    PPPPP   P  +  PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -2

Query: 582 PPPPPPXKKXXPPPPXKXXXXXXXXXXXXXXKKPPPP 472
           PPPPPP      P P                  PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 597 GXXGXPPPPPPXKKXXPPPP 538
           G    PPPPP      PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = -2

Query: 582 PPPPPPXKKXXPPPPXKXXXXXXXXXXXXXXKKPPPPXXXXKKKGGAXP 436
           PPPPPP ++    PP                  PPPP        G+ P
Sbjct: 312 PPPPPPSRRNRGKPP--------IGNGSSNSSLPPPPPPPRSNAAGSIP 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,619
Number of Sequences: 5004
Number of extensions: 21172
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)