Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D13
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 30 0.52
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 29 0.69
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 4.8
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 27 4.8
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 8.5
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.9 bits (64), Expect = 0.52
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 670 AAYPIPVRLSPFGKRGAFLIAHAVGISVRCRSFAPSW-AVCTNPPFSPTAAPYPVLSS*V 846
AA P SP G F A + G + S++PS T+P + P++ Y S
Sbjct: 1527 AASPYKGVQSP-GYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSY 1585
Query: 847 HPVDPTYRPGS 879
P P+Y P S
Sbjct: 1586 SPTSPSYSPTS 1596
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1589 SPSYSP-TSPSYSPTSPSYSATSPSYSPTSPSYSPTS 1624
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1603 SPSYSA-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1610 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1617 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1624 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1659
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1631 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1638 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1673
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1645 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1652 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1659 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1666 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1701
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1673 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1680 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1687 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1694 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1729
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1701 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1736
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1708 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1743
Score = 29.1 bits (62), Expect = 0.91
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1715 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
++P +SPT+ Y S P P+Y P S
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1603
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTY 867
+PS++ T+P +SPT+ Y S P P+Y
Sbjct: 1575 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSY 1606
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P+Y P S
Sbjct: 1582 SPSYSP-TSPSYSPTSPSYSPTSPSYSATSPSYSPTS 1617
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +S T+ Y S P P+Y P S
Sbjct: 1596 SPSYSP-TSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 29.5 bits (63), Expect = 0.69
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 822 LSGTIVLSPPGRPDLSPWQHPGTD 893
+S TIV++PP +P + P+ PG D
Sbjct: 126 ISHTIVVTPPPQPGMGPYIGPGAD 149
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 559 SQKSTLKSEVAKPDRTIKIPGVXPWKAPSCALPVSDPAAYPIPVRLSPFGKRGAFLIAHA 738
S K +L S + P +K+P K+P +P + ++ P+R + ++ H+
Sbjct: 195 SPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHS 254
Query: 739 V----GISVRCRSFAPSWAVCT 792
I + +FAP+ T
Sbjct: 255 TPSPPSIRTKLEAFAPNSTFAT 276
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 715 HASRREKGGQVSGKRQGRKQGERTRE 638
HA RR++ G+ GR++GE +R+
Sbjct: 9 HAQRRDESAYRLGEEDGRQKGESSRK 34
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 772 PSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPG 876
P + + T FS +PYP+++ P+D T G
Sbjct: 108 PQFVLVTTHKFSINESPYPIIAVSQSPIDKTIACG 142
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 772 PSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRP 873
PS+A T P F T + P+ SS P P RP
Sbjct: 216 PSYAASTQPEFQQTTS--PIFSSSSTPPPPPPRP 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,560
Number of Sequences: 5004
Number of extensions: 68610
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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