Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D13
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0633 + 26276454-26277368 35 0.10
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 33 0.41
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 0.56
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 31 1.3
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.3
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.7
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574 31 1.7
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.9
05_07_0203 + 28391707-28392165 29 3.8
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.9
>03_05_0633 + 26276454-26277368
Length = 304
Score = 34.7 bits (76), Expect = 0.10
Identities = 41/131 (31%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Frame = -3
Query: 887 TRVLPGR*VGSTGWTQDDSTG*GAAVGLNGGFVHTAQLGANDL-----HRTEIPTA-*AM 726
TR GR +G GW ++ + GAA G +GG + LG L RTE+ A A
Sbjct: 48 TRDDGGRSLGPRGWHEEGAPELGAAGGWDGGGQSSGNLGLRGLRSSGRRRTELEAAEGAF 107
Query: 725 RKAPRFPKGERRTGIG*AAGS--------ETGRAHEGAFQGXTPGIFIVLSGFATSDLSV 570
+GER G G E G A GA G I + +D +
Sbjct: 108 AATGVLDEGERSLGPGGGTRRGCRSSGLWEEGTAEGGAQGGGEVPIAVGARLVEAADGTP 167
Query: 569 DFCDARQGGGA 537
DAR GGGA
Sbjct: 168 AASDARGGGGA 178
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 32.7 bits (71), Expect = 0.41
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 799 PFSPTAAPYPVLSS*VHPVDPTYRPGSTLV 888
P+SP +PYP HPV P+Y PG T V
Sbjct: 208 PYSPVYSPYP------HPVSPSYTPGHTPV 231
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 28.3 bits (60), Expect(2) = 0.56
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGSTL 885
TNP P PYP V P PTY+P +T+
Sbjct: 340 TNPTTMPY--PYPPQQGGVMPTTPTYQPPATM 369
Score = 22.6 bits (46), Expect(2) = 0.56
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 604 TIKIPGVXPWKAPSCALPVSDPAAYP 681
T P + P AP+ PV++PA P
Sbjct: 312 TTPTPFMNPVTAPTMPSPVTNPATTP 337
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 798 PVQPDRCALSGTIVLSPPGRPDLSPWQHPGTDT 896
P PD+ A G SP RP PW PG DT
Sbjct: 396 PSNPDQLANQG----SPQYRPSTGPWNRPGEDT 424
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 31.1 bits (67), Expect = 1.3
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -3
Query: 653 RAHEGAFQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 474
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 473 TCSFLRYPLILWITVLPPLSELIPLAAA 390
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y SS P P Y P S
Sbjct: 1756 SPSYSP-TSPSYSPTSPSYSPTSSAYSPTSPAYSPTS 1791
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y SS P P+Y P S
Sbjct: 1672 TSPVYSPTSPVYNPTSSAYSPTSPSYNPTS 1701
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGST 882
+PS++ T+P +SPT+ Y S P P+Y P S+
Sbjct: 1742 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1778
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT++ Y S P P Y P S
Sbjct: 1763 SPSYSP-TSPSYSPTSSAYSPTSPAYSPTSPGYSPTS 1798
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P P+Y P S
Sbjct: 1741 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1770
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P P+Y P S
Sbjct: 1783 TSPAYSPTSPGYSPTSPSYSPSSPSYNPSS 1812
>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
Length = 212
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 640 PSCALPVSDPAAYPIPVRLSPFGKRGAFLIAHAV 741
PS P+S PA YP P R G ++I HAV
Sbjct: 123 PSALHPMSYPATYPAPPRHQQPAAVGDYVIGHAV 156
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 766 FAPSWAVCT-NPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
++PS V + P +SPT+ Y S P P+Y PGS
Sbjct: 1551 YSPSSPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGS 1589
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1596 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1631
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1603 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1610 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1666 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1701
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1673 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1680 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1701 SPSYSP-TSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1736
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P P+Y P S
Sbjct: 1721 TSPGYSPTSPSYSPTSPNYSPTSPSYNPSS 1750
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P Y P S
Sbjct: 1617 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPVYSPTS 1652
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P Y P S
Sbjct: 1624 SPSYSP-TSPSYSPTSPSYSPTSPVYSPTSPAYSPTS 1659
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 763 SFAPSWAVC--TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
S++P+ V T+P +SPT+ Y S P P+Y P S
Sbjct: 1640 SYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P Y P S
Sbjct: 1687 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1722
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P P+Y P S
Sbjct: 1595 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1624
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P Y P S
Sbjct: 1631 SPSYSP-TSPSYSPTSPVYSPTSPAYSPTSPAYSPTS 1666
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P P+Y P S
Sbjct: 1658 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P P+Y P S
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P Y P S
Sbjct: 1708 SPSYSP-TSPAYSPTSPGYSPTSPSYSPTSPNYSPTS 1743
>05_07_0203 + 28391707-28392165
Length = 152
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 712 ASRREKGGQVSGKRQGRKQGERTRE 638
A + EKGG GK+ GRK+G+++ E
Sbjct: 39 AGKGEKGGAGEGKKAGRKKGKKSVE 63
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 351 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 506
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,358,811
Number of Sequences: 37544
Number of extensions: 544661
Number of successful extensions: 1787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -