Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D13
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 33 0.37
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 2.6
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 2.6
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 29 4.6
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 29 4.6
Z74031-18|CAA98453.3| 333|Caenorhabditis elegans Hypothetical p... 29 6.0
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 32.7 bits (71), Expect = 0.37
Identities = 29/87 (33%), Positives = 37/87 (42%)
Frame = +1
Query: 601 RTIKIPGVXPWKAPSCALPVSDPAAYPIPVRLSPFGKRGAFLIAHAVGISVRCRSFAPSW 780
+ + PGV P AP A + AA P P+ P A L+A + +FA
Sbjct: 41 KPVLAPGVAPVAAPVLAAAPTVLAA-PAPLLAPP-----APLLAPPAPVLAAAPAFAAPA 94
Query: 781 AVCTNPPFSPTAAPYPVLSS*VHPVDP 861
V PP AAP P L+ V PV P
Sbjct: 95 PVFAAPPAPVLAAPAPFLAPPVPPVAP 121
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1623 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1658
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P PTY P S
Sbjct: 1678 TSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1707
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P PTY P S
Sbjct: 1733 TSPSYSPTSPQYSPTSPQYSPSSPTYTPSS 1762
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P PTY P S
Sbjct: 1734 SPSYSP-TSPQYSPTSPQYSPSSPTYTPSSPTYNPTS 1769
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1609 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1616 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1651
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1630 SPSYSP-TSPSYSPTSPSYSPTSPSYSPSSPSYSPSS 1665
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 760 RSFAPSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRP 873
R F+ T+P +SPT+ Y S P PTY P
Sbjct: 1771 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTP 1808
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1637 SPSYSP-TSPSYSPTSPSYSPSSPSYSPSSPSYSPSS 1672
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ ++P +SPT+ Y S P PTY P S
Sbjct: 1665 SPSYSP-SSPRYSPTSPTYSPTSPTYSPTSPTYSPTS 1700
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P ++P+ + P S+ P PTY P S
Sbjct: 1802 TSPTYTPSPSEQPGTSAQYSPTSPTYSPSS 1831
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1630 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1665
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P PTY P S
Sbjct: 1685 TSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1714
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P +SPT+ Y S P PTY P S
Sbjct: 1740 TSPSYSPTSPQYSPTSPQYSPSSPTYTPSS 1769
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P PTY P S
Sbjct: 1741 SPSYSP-TSPQYSPTSPQYSPSSPTYTPSSPTYNPTS 1776
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1616 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1651
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1623 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1658
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1637 SPSYSP-TSPSYSPTSPSYSPTSPSYSPSSPSYSPSS 1672
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 760 RSFAPSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRP 873
R F+ T+P +SPT+ Y S P PTY P
Sbjct: 1778 RGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTP 1815
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ T+P +SPT+ Y S P P+Y P S
Sbjct: 1644 SPSYSP-TSPSYSPTSPSYSPSSPSYSPSSPSYSPSS 1679
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 769 APSWAVCTNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
+PS++ ++P +SPT+ Y S P PTY P S
Sbjct: 1672 SPSYSP-SSPRYSPTSPTYSPTSPTYSPTSPTYSPTS 1707
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 790 TNPPFSPTAAPYPVLSS*VHPVDPTYRPGS 879
T+P ++P+ + P S+ P PTY P S
Sbjct: 1809 TSPTYTPSPSEQPGTSAQYSPTSPTYSPSS 1838
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 735 RCRYLSSV*VVRSKLGCVHEPPVQPDRCALSGTIVLSPPGRPDLSP 872
RC+ L+++ V KL V +P +Q + + PG P L P
Sbjct: 723 RCKALANIMVTMKKLAMVQDPSIQRRKKHVERADSAGAPGSPRLPP 768
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 735 RCRYLSSV*VVRSKLGCVHEPPVQPDRCALSGTIVLSPPGRPDLSP 872
RC+ L+++ V KL V +P +Q + + PG P L P
Sbjct: 622 RCKALANIMVTMKKLAMVQDPSIQRRKKHVERADSAGAPGSPRLPP 667
>Z74031-18|CAA98453.3| 333|Caenorhabditis elegans Hypothetical
protein F32D8.1 protein.
Length = 333
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 645 VRSPCFRPCRLPDTCPPFSLREAWRLSHSSRCRYLSSV*VVRSKLGCVHEPPVQPDRCAL 824
+ P +R C P C P LRE +S+RC + S+ VV + + P PD+ L
Sbjct: 217 ILGPLYRICGTPTYCAPEVLRET---GYSTRCD-IWSLGVVLYVMLVGYAPFRAPDQTRL 272
Query: 825 SGTIVLSPPGRPDLSPWQ 878
I+ + P D+ W+
Sbjct: 273 FKLIMQAKPNL-DMPEWK 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,250
Number of Sequences: 27780
Number of extensions: 411111
Number of successful extensions: 1145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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