Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D12
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    77   4e-15
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   1.3  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   3.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   6.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   8.9  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
 Frame = +2

Query: 215 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADIPFS 391
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R+  +K+A+ A I FS
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70

Query: 392 XXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRXF 499
                             DWLRVV++    YELR +
Sbjct: 71  GRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 385 RNVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 263
           R + G+S F ++P     +   IC  L   V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 756 HPKFSQIKHFFHCI 715
           HPKFS+ +HF  CI
Sbjct: 305 HPKFSRAQHFISCI 318


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 47  IFAVFTVTALHVFVCHKWQ 103
           +F    VT +H + CH WQ
Sbjct: 470 LFLTIDVTIMHHYACHVWQ 488


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 215 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 325
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,067
Number of Sequences: 5004
Number of extensions: 46840
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)