Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D11
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.22 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 590 GXXPPPPPPXXXKXFFFXXXPPPPPXXGXXK 498
           G  PPPPPP   +       PPPPP  G  K
Sbjct: 7   GNPPPPPPPPGFEP---PSQPPPPPPPGYVK 34



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 589 GXXPPPPPPXXXKXFFXXXXPPPP 518
           G  PPPPPP   +       PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 580 PPPPPPXXXKXFFXXXXPPPPXXKEXK 500
           PPPPPP           PPP   K+ K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 643 PPPXXXXXXXXPPPPPP 693
           PPP        PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 643 PPPXXXXXXXXPPPPPP 693
           PPP        PPPPPP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 590 GXXPPPPPPXXXKXFFFXXXPPPPPXXGXXKXFFFXP 480
           G  PPPPPP           PPPPP        ++ P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 643 PPPXXXXXXXXPPPPPPXRXGXGG 714
           PPP        PPPPPP     GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 643 PPPXXXXXXXXPPPPPPXRXGXG 711
           PPP        PPPPPP   G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 589 GXXPPPPPPXXXKXFFXXXXPPPP 518
           G  PPPPPP           PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 643 PPPXXXXXXXXPPPPPP 693
           PPP        PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 643 PPPXXXXXXXXPPPPPP 693
           PPP        PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 589 GXXPPPPPPXXXKXFFXXXXPPPP 518
           G  PPPPPP     F+     P P
Sbjct: 304 GLPPPPPPPPPSNDFWKDSNEPAP 327



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 590 GXXPPPPPPXXXKXFFFXXXPPPP 519
           G  PPPPPP     F+     P P
Sbjct: 304 GLPPPPPPPPPSNDFWKDSNEPAP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,493
Number of Sequences: 5004
Number of extensions: 29983
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)