Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D08
         (909 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.       69   3e-13
AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.           25   4.2  

>Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.
          Length = 107

 Score = 68.5 bits (160), Expect = 3e-13
 Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +2

Query: 137 PMGRXHKLLRNGNYAPRIGSGXXXXXXXXXXXXXXXXXXXXXXXXKEMKKTR-VIPRHIL 313
           P+GR H+LLR GNYA R+G G                        ++ KK R +IPR + 
Sbjct: 11  PVGRIHRLLRKGNYAERVGPGAPVYLAAVMEYLAAEVLELAGNRARDNKKERRIIPR-LQ 69

Query: 314 FAIKNDEELSRMMTGVTISQGGVLPAIQPV 403
            AI+NDEE ++++  VTI+QGGVLP IQ V
Sbjct: 70  LAIRNDEEENKLLRRVTIAQGGVLPNIQAV 99


>AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
 Frame = +3

Query: 45  TFATFLPTXXVFQKHTQKAQNSVFACRPSLPRWAGYT--SSSETATTLPGSVPEPRYTSQ 218
           T  T  PT       T  +Q +      + P W   T  S+  T TT     P P  T+ 
Sbjct: 127 TTTTTFPTTTTTSAPTTPSQWTDPTITTTTPIWTDPTTWSAPTTTTTWSDQPPPPTTTTT 186

Query: 219 RLWNTS 236
            +W  S
Sbjct: 187 TVWTDS 192


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,575
Number of Sequences: 2352
Number of extensions: 10909
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)