Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D07
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    29   6.7  
03_05_0067 - 20460206-20460703,20461255-20461530                       28   8.9  

>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 629 GGGKIWGXPQXPP 667
           GGG +WG PQ PP
Sbjct: 11  GGGSLWGPPQPPP 23


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 904 PPPPXFFXXGAPPP 863
           PPPP +F  G PPP
Sbjct: 15  PPPPQYFQAGPPPP 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,050
Number of Sequences: 37544
Number of extensions: 226399
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)