Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D06
         (1003 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.5  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   8.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   8.6  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 322 VKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPG-----SKQEEVRA 486
           +K  +  EIK   K +YI+ E K        K+L    VQ  V P G      KQ+  RA
Sbjct: 138 IKTLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVE--VQDEVKPRGVLNIIPKQDNFRA 195

Query: 487 I 489
           I
Sbjct: 196 I 196


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 193 VFDTCLSSATKGSSTLCLLLWQEPTLSNATASKTF 89
           V+D  + +        C +L++EP L N   S+ F
Sbjct: 56  VYDKSIFAKLDSICEDCYMLFREPQLHNLCRSECF 90


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 328 SSRSCSLQVCRHLRLFAALL 269
           + ++C++ +  HL LFA LL
Sbjct: 38  TDKNCTIVIIFHLILFAVLL 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,357
Number of Sequences: 336
Number of extensions: 2146
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28547508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)