Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D06
         (1003 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    29   1.0  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    29   1.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   5.5  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    26   9.6  

>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +1

Query: 289 ANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSK 468
           +N+ +LE+    K  +PDE +  +K+      GK +    +KK+ T    + F++   +K
Sbjct: 264 SNNFQLEIGTEAKSAAPDEPQEIIKS---VSGGKRRGKRKVKKYATTKDEEGFLV---TK 317

Query: 469 QEEVRAIYKEN 501
           +EEV   + E+
Sbjct: 318 EEEVWESFSED 328


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 283  FAALLSCLRRPGAR--PXLMSWLHGHK***ARVFDTCLSSATKGSSTLCLLLWQEPTLSN 110
            F  +L CLR+  A   P +  +    K     +   CL +    S+  CL++WQ     +
Sbjct: 926  FKIVLGCLRKTEAEYWPMIFKYFGEPK----DLMKKCLETEDVKSAAECLIIWQIHQ-GS 980

Query: 109  ATASKTFLSI 80
            A+ + TFLSI
Sbjct: 981  ASCASTFLSI 990


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 175 SSATKGSSTLCLLLWQEPTLSNATA---SKTFLSIVVSRSLSGITHQNL 38
           SS+T  SS+  L++   P  S++++   S + L    S SLS ITH +L
Sbjct: 673 SSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSL 721


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 555 FWWWR---WQFVFWNQNS*YTVFFV 490
           + +WR   WQF++WN    +   F+
Sbjct: 49  YQYWRILLWQFIYWNSTEVFQALFI 73


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 451 LPPGSKQEEVRAIYKENGI 507
           L P S ++ VR IYKENGI
Sbjct: 197 LRPESYRKVVRRIYKENGI 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,100
Number of Sequences: 5004
Number of extensions: 36499
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)