Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D05
         (1200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 744 PPXXXXXXXPPPPPPXXXGGGG 809
           PP       PPPPPP    G G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG 774



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 742 PPPXXXXXXXPPPPPXGXXGGGG 810
           PPP       PPPPP     G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 744 PPXXXXXXXPPPPPPXXXGGGGGG 815
           PP       PPPPPP       GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,890
Number of Sequences: 5004
Number of extensions: 30639
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)