Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_D04
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 36 0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.84
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 27 4.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.8
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 165 RMRTGNTIRYNAXRRHWGR 221
R+RTGNT+ YN RRHW R
Sbjct: 28 RLRTGNTVHYNMKRRHWRR 46
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Frame = -3
Query: 724 KXPPPXPPXXXX-----APXXAPXKKXFXGGXPPXXGEKXXPPXGGXXPPPP 584
K PPP PP AP P GG PP G PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 384 PPXFPXKXXXXPP-PXXGGAPPXPXXFFWGGPXXPPPXXKTPPPXXXXXXQXXXXPSP 214
P P PP P GG PP P G PPP PPP P+P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPPAVSAGGSRYYAPAP 797
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 390 KXPPXFPXKXXXXPPPXXGGAPPXPXXFFWGGPXXPPP 277
K PP P P P P P GGP PPP
Sbjct: 730 KSPPP-PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = -1
Query: 393 KKXPPXFPXKXXXXPPPXXGGAPPXPXXFFWGGPXXPPPXXKT---PPP 256
K PP P P P PP P G P PPP PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.84
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 481 PPPPPPPXXXKKXKPGXG 428
PPPPPPP + KP G
Sbjct: 311 PPPPPPPSRRNRGKPPIG 328
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -3
Query: 745 GGGGXFXKXPPPXPPXXXXAPXXAPXKKXFXGGXPPXXGEKXXPPXGGXXPPP 587
G G PPP PP A P PP P G PPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS--APSTGRQPPP 378
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 266 PPPPXXXXAXXXXXAPPPVTPXSVISN 186
PPPP A PPP++ +SN
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Frame = -3
Query: 724 KXPPPXPPXXXXAPXXAPXKKXFXGGXPPXXGEKXXPPXG-----GXXPPPP 584
K P P P A A KK PP + PP G PPPP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Frame = -1
Query: 396 KKKXPPXFPXKXXXXPPPXXGGA--------PPXPXXFFWGGPXXPPPXXKTPPP 256
K+ PP P + PP G+ PP P G PP PPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 481 PPPPPPPXXXKKXK 440
PPPPPPP KK K
Sbjct: 24 PPPPPPPGYVKKRK 37
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 487 NXPPPPPPPXXXKKXKP 437
N PPPPPPP +P
Sbjct: 8 NPPPPPPPPGFEPPSQP 24
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/75 (32%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = +1
Query: 259 GGGFSX-GGGXXGPPPKKXXXXXXXXXXXXXXXXXXFXGKXGGPFFFXXPXXXGEXXFPX 435
GGGF GGG GPPP G GGP F G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF----EGGPGGFGG 242
Query: 436 XVXFFFXXXGGGGGG 480
F GG GGG
Sbjct: 243 GPGGFGGGLGGFGGG 257
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -1
Query: 381 PXFPXKXXXXPP-PXXGGAPPXPXXFFWGGPXXPPPXXKTPPP 256
P P PP P APP P G P PPP P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSV-GVPPVPPPSTAPPVP 1220
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = -1
Query: 381 PXFPXKXXXXPPPXXGGAPPXPXXFFWGGPXXPPPXXKTPP 259
P P P P G PP P P P P PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSV-AAPPVPKPSVAVPP 1113
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = -1
Query: 381 PXFPXKXXXXPP-PXXGGAPPXPXXFFWGGPXXPPPXXKTPP 259
P P PP P GAPP P P P P PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSV-AAPPVPAPSSGIPP 1180
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = -1
Query: 381 PXFPXKXXXXPP-PXXGGAPPXPXXFFWGGPXXPPPXXKTPP 259
P P PP P APP P G P P P K PP
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSA-GLPPVPVPTAKAPP 1238
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = -1
Query: 381 PXFPXKXXXXPP-PXXGGAPPXPXXFFWGGPXXPPPXXKTPPPXXXXXXQXXXXPSPSDA 205
P P PP P GAPP P P P P PP P+PS A
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSV-AAP--PVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = -1
Query: 381 PXFPXKXXXXPP-PXXGGAPPXPXXFFWGGPXXPPPXXKTPPP 256
P P PP P GAPP P P P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSV-AAPPVPAPSGAPPVP 1162
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 215 PVTPXSVISNSVSCAHPSP 159
P TP S +N V CA PSP
Sbjct: 343 PKTPQSFSTNIVQCASPSP 361
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 487 NXPPPPPPP 461
N PPPPPPP
Sbjct: 188 NPPPPPPPP 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,850
Number of Sequences: 5004
Number of extensions: 31224
Number of successful extensions: 236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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