Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D03
         (885 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.60 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   7.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   7.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 403 MPAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 507
           +P +  ++ S  S  +PS  PE  SV P +L  R+
Sbjct: 202 IPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 424 SVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMHMK 552
           SVSP +   PSP PE   + P   AS K+  +    T L+ ++
Sbjct: 92  SVSPTTPPTPSPPPE-ERLTPSKDASSKRIXTAFTSTQLLELE 133


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -3

Query: 634 PILSASLMVSSKSFSTGNTLLTRPIFS-ASCASKKFPVNTISIAFDLPTYLGRRWVPPAP 458
           PILS  +   + S+ T +     P     S      P++T S+  D   +     +PP P
Sbjct: 175 PILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP 234

Query: 457 GMVP 446
           G+ P
Sbjct: 235 GLSP 238


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -3

Query: 634 PILSASLMVSSKSFSTGNTLLTRPIFS-ASCASKKFPVNTISIAFDLPTYLGRRWVPPAP 458
           PILS  +   + S+ T +     P     S      P++T S+  D   +     +PP P
Sbjct: 67  PILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHP 126

Query: 457 GMVP 446
           G+ P
Sbjct: 127 GLSP 130


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 444 IGTIPGAGGTQ--RLPRYVGKSKAMEIVLTGNFFDAHEAE-KMGLVSKVFPVEKLLEETI 614
           +GT+ GAGGT    +   V  S  + IV  G F +   A+  + +   +   + +L+E +
Sbjct: 287 VGTMTGAGGTAIVSISTSVSTSVYLAIVFNGLFTEEDVADVPINVTLSLDEKKYILQEVV 346

Query: 615 KL 620
           ++
Sbjct: 347 RV 348


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 443 HWHHPRSRRHPASSQIRWQVESNG 514
           HWH   S+  P  SQ   Q+  NG
Sbjct: 273 HWHLTDSQSFPLVSQRVPQLAKNG 296


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 285 EDPARKSVSTNLLILLKIYIF 347
           +D A KSV  +LL   KI++F
Sbjct: 64  QDDALKSVYASLLCTEKIFLF 84


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = +1

Query: 406 PAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETS 537
           P + R ++       P+      + FP   +  +QWR+    TS
Sbjct: 329 PKRPRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQWRNNQPSTS 372


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +3

Query: 483 PRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAERIGTHSP 647
           PR   K+ ++ + +       +  EK   +SK+ P E      +KL+ +  +  P
Sbjct: 177 PRITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKSASSLP 231


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +3

Query: 483 PRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAERIGTHSP 647
           PR   K+ ++ + +       +  EK   +SK+ P E      +KL+ +  +  P
Sbjct: 125 PRITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKSASSLP 179


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +3

Query: 483 PRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAERIGTHSP 647
           PR   K+ ++ + +       +  EK   +SK+ P E      +KL+ +  +  P
Sbjct: 308 PRITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKSASSLP 362


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,842
Number of Sequences: 336
Number of extensions: 4946
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)