Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    32   0.12 
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    31   0.22 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.6  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   8.2  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.2  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
 Frame = +3

Query: 336 IYIFDAVQLGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSK 506
           + + + + +GGG  LAM      A E   F  PE  IG       +    RLP Y G   
Sbjct: 156 VALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFG--- 212

Query: 507 AMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAE 626
              + LT      ++  + G+ +   P         +LAE
Sbjct: 213 -TYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAE 251


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 415 RRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 507
           RR+S S RS +    EPE PS+  + +AS K
Sbjct: 10  RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 409 AKRRNSVSPRSTLAPSPEPEAPSVFP 486
           AK +  V+P    AP  EP  PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 325 FYLKSIFLMPCSLEVVVSWQCCAISSMPAKRRNSVS 432
           F + +IF + CS   V S + C I   PA +R  +S
Sbjct: 7   FAISAIFFL-CSFSYVSSIKLCGIPGAPACKRREIS 41


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 334 KSIFLMPCSLEVVVSWQCCAISSM-PAKRRNSVSPRSTLAPSPEPEAPSVFPD 489
           K + + P +++V V     ++  M P+  R+S+SP   L+P  +P     F D
Sbjct: 503 KRLQIDPKTIKVKVKDFVMSMKRMIPSSERSSISPSKPLSPELKPLLNEAFQD 555


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 406 PAKRRNSVSPRSTLAPSPEPEAP 474
           P K +N++  +  L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,608,061
Number of Sequences: 5004
Number of extensions: 80716
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)