Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_D02
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      34   0.024
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   2.1  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   4.8  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   6.4  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    25   8.4  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 20/67 (29%), Positives = 24/67 (35%)
 Frame = +2

Query: 527 FXXXXFFXXXFFXXXFXXXXXGFGVXXFFFXFXLXXXXXFFXXXFFFFXXFFFFXXXFXX 706
           F    FF   FF   F      F +  F   +       F    FF+F  F FF   F  
Sbjct: 69  FTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFF--CFFFYFSLFSFFSFLFTS 126

Query: 707 FFFSFFF 727
             F+FFF
Sbjct: 127 LHFNFFF 133



 Score = 23.8 bits (49), Expect(2) = 0.88
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
 Frame = +1

Query: 598 GXXFF---FFXFXXXXXXFFFXXFFFFXXFFFFXXXXLXFFFFFF 723
           G  FF   F  F       FF   FFF   + F    L  F F F
Sbjct: 3   GMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLF 47



 Score = 23.4 bits (48), Expect(2) = 0.88
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 706 FFFFFFFF 729
           FFFFFFFF
Sbjct: 78  FFFFFFFF 85


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +1

Query: 607 FFFFXFXXXXXXFFFXXFFFFXXFFFFXXXXLXFFFFFFFF 729
           FFFF        F F   FF    F           F FFF
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFF 159



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = +2

Query: 593 FGVXXFFFXFXLXXXXXFFXXXFFFFX--XFFFFXXXFXXFFFSFFFF 730
           F     FF F L      F   F FF    F  +   F    F FFFF
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 729 KKKKEKKKX*XXXXKKKKXXKKKKXXKKK 643
           K++K +KK      K+KK  K+KK  KKK
Sbjct: 444 KEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 730 KKKKRKKKXXKXXXKKKKXXKKKKXXXKKXXXXX*XKXKKKXXNPKP 590
           KKKK+K K      KK +  +KK+   +K       + K    N  P
Sbjct: 178 KKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDNDANAAP 224


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 729 KKKKEKKKX*XXXXKKKKXXKKKKXXKKK 643
           KKK+ KKK      KK+K     K  KKK
Sbjct: 199 KKKEHKKKDKESSSKKRKSGSSDKEEKKK 227


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 729 KKKKEKKKX*XXXXKKKKXXKKKKXXKKK 643
           KK++E KK      KK K  KKKK  KKK
Sbjct: 210 KKRRESKKS-----KKGKAPKKKKPSKKK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,996
Number of Sequences: 5004
Number of extensions: 6398
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)