Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_C24
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0333 + 16474011-16475478,16475622-16475641 166 2e-41
06_01_0080 + 644021-645463 155 3e-38
01_06_0663 - 30991390-30992340 41 0.002
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 33 0.31
05_07_0134 - 27911920-27912762 31 1.3
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 30 2.2
03_05_0556 - 25564025-25564274,25565244-25565470 29 3.8
12_01_0958 + 9542399-9542522,9542600-9542646 28 8.9
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883... 28 8.9
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 28 8.9
>11_04_0333 + 16474011-16475478,16475622-16475641
Length = 495
Score = 166 bits (404), Expect = 2e-41
Identities = 85/178 (47%), Positives = 114/178 (64%), Gaps = 2/178 (1%)
Frame = +1
Query: 160 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKN-EAKGT-KVIGATSLDDMVS 333
I L GLA MGQNL LN+ +KG+ + +NRT +KV+ + EA+G V+G V
Sbjct: 24 IGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFVL 83
Query: 334 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 513
L RPR +VLLV+AG AVD + L+P L GD I+DGGN Y +T++ +E + GILY
Sbjct: 84 SLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGILY 143
Query: 514 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDEPCCDWVGEDGXRPF 687
+GMGVSGGE+GAR GPSLMPGGH A+ +I++I + A+ D C +VG G F
Sbjct: 144 LGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNF 201
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +2
Query: 680 GHFVKMVHNGIEYGDMQLICEAYHLMKDVIGIEQDEMA 793
G+FVKMVHNGIEYGDMQLI EAY +++ V G+ E+A
Sbjct: 199 GNFVKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIA 236
>06_01_0080 + 644021-645463
Length = 480
Score = 155 bits (377), Expect = 3e-38
Identities = 80/179 (44%), Positives = 116/179 (64%), Gaps = 3/179 (1%)
Frame = +1
Query: 160 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKN-EAKGT-KVIGATSLDDMVS 333
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E ++ + +G V G V+
Sbjct: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPASFVN 65
Query: 334 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 513
+++PR +++LVKAG VD+ + L L +GD IIDGGN Y +T++ K + G+LY
Sbjct: 66 SIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERGLLY 125
Query: 514 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDE-PCCDWVGEDGXRPF 687
+GMGVSGGE+GAR GPSLMPGG A+ +I++I + A+ D PC ++G+ G F
Sbjct: 126 LGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNF 184
Score = 54.8 bits (126), Expect = 9e-08
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = +2
Query: 653 VTGSVKMXPGHFVKMVHNGIEYGDMQLICEAYHLMKDVIGIEQDEM 790
VT K G+FVKMVHNGIEYGDMQLI EAY ++K V + E+
Sbjct: 173 VTYIGKGGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSEL 218
>01_06_0663 - 30991390-30992340
Length = 316
Score = 40.7 bits (91), Expect = 0.002
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Frame = +1
Query: 160 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKL 339
+A +G VMGQ++ ++ GY + +NRT SK E + GAT + +
Sbjct: 22 VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSR--------GATLAESPRAAA 73
Query: 340 KRPRKIVLLVKAGFAVDEFVKKLIPL------LSKGDIIIDGGNSQYLDTQKWCKELSGT 501
I L+V GF D L P L+ G +++D S + + +
Sbjct: 74 AAADVIFLMV--GFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAK 131
Query: 502 GILYVGMGVSGGEDGARYGP-SLMPGGHPAAWPHIKEIFQ 618
V VSGG+ GAR S+ GG A + +F+
Sbjct: 132 SCAAVDAPVSGGDRGARSATLSIFAGGDAAVVARLAPLFK 171
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.1 bits (72), Expect = 0.31
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 157 DIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKV 261
++ +GL +MG+ + N+ G+ V +NRT+SKV
Sbjct: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKV 36
>05_07_0134 - 27911920-27912762
Length = 280
Score = 31.1 bits (67), Expect = 1.3
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Frame = +1
Query: 220 GYVVCAFNRTVSKVEEFLKNEAK--GTKVIGATSLDDMVSKLKRPRKIVLLVKAGFAVDE 393
G+ V A+ RT +K E + A G+ A + D + + + P + +V +
Sbjct: 9 GFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVVL------D 62
Query: 394 FVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGP-SLM 570
++ L G +++D +S ++ G V VSGG+ GAR G +L+
Sbjct: 63 AASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGARDGALALL 122
Query: 571 PGGHPAAWPHIKEIF 615
GG A + +F
Sbjct: 123 AGGDEAVVSWLAPLF 137
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 160 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 288
+ +GL +MG + N+ + G V +NRT SK + L AK
Sbjct: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAK 95
>03_05_0556 - 25564025-25564274,25565244-25565470
Length = 158
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 491 NSLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTAN-PAFTKRTIFLG 345
NS H + LPP PLL + FFT+S++ P F KR + G
Sbjct: 28 NSSHPCKADEGSRLPPGSRGLPLLGESLEFFTSSTSLELPVFFKRRLNRG 77
>12_01_0958 + 9542399-9542522,9542600-9542646
Length = 56
Score = 28.3 bits (60), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 552 IWTIFDAWWASCCMAA 599
+W + D W A CC+AA
Sbjct: 15 VWALLDGWIAVCCLAA 30
>03_06_0273 +
32787021-32787434,32788096-32788221,32788305-32788378,
32788468-32788537,32788622-32788677,32788762-32788833,
32788945-32789039,32789196-32789262,32789359-32789488,
32789578-32789793,32789887-32790017,32790719-32790893,
32790977-32791067,32792151-32792308,32792763-32792951,
32793066-32793125
Length = 707
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 445 GGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGP 561
G + +Y+ +K K G G +YVG VSGG G+R GP
Sbjct: 142 GNSPEYITDRKLGK--GGFGQVYVGRRVSGG--GSRTGP 176
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +1
Query: 202 LNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKLKRPRKIVLLVKAGF 381
L +ND + + V +FLK G + LD +V + P+K + G
Sbjct: 144 LYVNDAFGTAHRAHASTEGVTKFLKPAVAG--FLMQKELDYLVGAVANPKKPFAAIVGGS 201
Query: 382 AVDEFVKKLIPLLSKGDIIIDGG 450
V + + LL+K D++I GG
Sbjct: 202 KVSTKIGVIESLLAKVDVLILGG 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,018
Number of Sequences: 37544
Number of extensions: 449332
Number of successful extensions: 1236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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