Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_C22
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 0.59
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.86
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.6
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect(2) = 0.59
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 784 GGXXPPPPPP 755
GG PPPPPP
Sbjct: 303 GGLPPPPPPP 312
Score = 23.0 bits (47), Expect(2) = 0.59
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 772 PPPPPPXXFXW 740
PPPPPP W
Sbjct: 309 PPPPPPSNDFW 319
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 588 PPPPXXGGGXKKKXXPPXPPPXX*RGGA 505
PPPP G PP PPP GG+
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 787 GGGXXPPPPPPXXFXWGG 734
G G PPPPPP GG
Sbjct: 772 GAGPPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 606 PXXXXXPPPPXXGGGXKKKXXPPXPPPXX*RGGAPP 499
P PPP GG PP PPP G PP
Sbjct: 746 PAPIPVPPPAPIMGGP-----PPPPPPPGVAGAGPP 776
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 609 PPXXXXXPPPPXXGGGXKKKXXPPXPPP 526
P PPPP G PP PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 606 PXXXXXPPPPXXGGGXKKKXXPPXPPP 526
P PPPP G PP PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.0 bits (52), Expect(2) = 0.91
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 784 GGXXPPPPPP 755
GG PPPPPP
Sbjct: 759 GGPPPPPPPP 768
Score = 24.2 bits (50), Expect(2) = 2.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 784 GGXXPPPPPPXXFXWGGG 731
G PPPPPP GG
Sbjct: 772 GAGPPPPPPPPPAVSAGG 789
Score = 22.2 bits (45), Expect(2) = 0.91
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 772 PPPPPPXXFXWGGG 731
PPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 21.4 bits (43), Expect(2) = 2.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 787 GGGXXPPPPP 758
GG PPPPP
Sbjct: 759 GGPPPPPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = -3
Query: 609 PPXXXXXPPPPXXGGGXKKKXXPPXPPPXX*RGGAPP 499
PP PP G PP PPP G+ P
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 588 PPPPXXGGGXKKKXXPPXPPP 526
PPPP G + PP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 605 PXXXXXPPPPPXGGXXKKKXPPP 537
P PPPPP G + PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -1
Query: 608 PPXXXXXPPPPPXGGXXKKKXPPP 537
PP PPPPP + PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 588 PPPPXXGGGXKKKXXPPXPPP 526
PPPP G PP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 22.6 bits (46), Expect(2) = 6.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 784 GGXXPPPPPP 755
G PPPPPP
Sbjct: 7 GNPPPPPPPP 16
Score = 21.4 bits (43), Expect(2) = 6.6
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -2
Query: 772 PPPPPPXXF 746
PPPPPP +
Sbjct: 24 PPPPPPPGY 32
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 529 GGXGGGXFFFXXPPXGGGGGXXXXXGG 609
GG GGG F P G GGG GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 499 GGGPPPLXXXGGXGGGXFFFXXPPXGGGGGXXXXXG 606
GGGP GG GGG F P G GGG G
Sbjct: 241 GGGP------GGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 499 GGGPPPLXXX-GGXGGGXFFFXXPPXGGGGGXXXXXGG 609
GGGP GG GGG F G GGG GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,944
Number of Sequences: 5004
Number of extensions: 20772
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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