Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_C21
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   5.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   5.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   8.7  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   8.7  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   8.7  

>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 181 RSASGAPTISLSTPALVHFAQASSSPNVTETQPRDNMAGHRSAQKYERXARSS 23
           +SAS   + + ++P  V F+ AS+S N+T T  +   +     Q +   +RSS
Sbjct: 176 KSASLTASSAAASPT-VSFSPASTSENLTPTSSKSLASNTSLVQSFNSASRSS 227


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 454 FADCSLIVRSKFCKHHYYSNFCCKSCLEAGQLSPKXWKC 570
           F+  SL VRS FCKH     F   + LE  + +P  W C
Sbjct: 309 FSRISLPVRSVFCKH--IQCFDASAFLEMNKQTPS-WMC 344


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 404  TWTLDSCELYKLSAWHTYTPLS--PTVTRRIVRR 309
            T +LD+C++ +   W T +PL   P     ++RR
Sbjct: 1147 TLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRR 1180


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 499 HYYSNFCCKSCLEAGQLSPKXWKCKRRGLHQKKVV 603
           H + NFC  S L     + K   C+R+ +H  KV+
Sbjct: 223 HIFCNFCILSALGTTAATQKCPVCRRK-VHPNKVI 256


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 339 SDRHSAYRQTGNTSSTYPYVVS 274
           SDR S+Y    N +ST P +VS
Sbjct: 60  SDRASSYANANNVNSTQPQLVS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,718
Number of Sequences: 5004
Number of extensions: 55548
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)